barSeed - Barley Seed Development Database

Probe CUST_16852_PI390587928

Source Contig U35_47335

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16852_PI390587928	Hv_44K_v2	TCGCTCGTCTCAGATCCTCCATATGGAGCCTTTGGATTGACTTATCCCGACCACCATGAT	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376984	2959	2e-24	521 - 580	100	60 / 60	plus	ABC18757
MLOC	MLOC_63374.1	3066	2e-24	2420 - 2479	100	60 / 60	minus	ABC18757
JLOC1	JLOC1_41501.1	2990	8e-25	512 - 571	100	60 / 60	plus
Harvest21	ABC48298	555	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_47335	555	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_47335 555 Hv_44K_v2
GCAATTCGGTCCAGAAATAGCAAGTTCCTAACGAGCCCTCTGTGCCTAGCCCCCACCAGT
TTGAACCACCCTCCCCTCCGCCTCCCCGTTTCGCTGTCGTCCACCGCCAGCCAGGTCACA
AGGCCGGCCATGAGCAGCTCGCGCTCTCCGGCGGCCGTGGTGGACGAGGGTAATGCCAAG
ACGGCGGCGAGGGAGTGGGTCGGGTGGAAAGAGGAGGTCGTGCCGGGGAACGGCGACGGC
GAGGAGCGCAAGGTGTGCTACTACCTCCTCTGCGCGCCGCCCCAGGACGGCGGTAAGAGC
GAGAGGGATCTGGCGGTCGAGGGTAATTACTGCGGAGGCCCTGCGAACATAGCCTACTCG
GCGGACTTGCAGTTCCTGCTGTCCCTCGACAAGGCTCTGGACTCCGAGTCGGCGTCCGAT
AGGGTGGAGACGCTGACGTTGGAGATCACCGAGCTCCGGTGGAAGTGCAGGAGGGAGGTC
ATGGACTGGCTCACCTCGCTCGTCTCAGATCCTCCATATGGAGCCTTTGGATTGACTTAT
CCCGACCACCATGAT

Homology of Contig U35_47335 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None