- Probe CUST_16845_PI390587928
- Source Contig U35_23382
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16845_PI390587928 | Hv_44K_v2 | GCTTGTTTAAGTTTGCCCCTAACCTTATTTGAAATATTGTTCAAGAACGAACTAGCATCA | 332 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.085 | 0.072 | 0.422 | 2.458 | 5.834 | 10.766 |
| Raw | 2.606 | 3.878 | 34.929 | 301.262 | 256.660 | 526.925 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC25481 | 446 | 3e-25 | 333 - 392 | 100 | 60 / 60 | plus | ABC25481 |
| Harvest35 | U35_23382 | 446 | 3e-25 | 333 - 392 | 100 | 60 / 60 | plus |
Contig Sequence (446 bp)
>U35_23382 446 Hv_44K_v2 GCTTCTTTGCTTGGGTGTTAATTATTCCCGGAGGCAATGCAAGGGTAACCAATGCACAAA GCACTGCGAGCATGAGGGCTTCGGGTATGGGGAGTGTGACACGGACCATGAATATCCTGA ACTTGTTTACTGCGTCTGCTTCATGCCATGCTGATTTTGCTTCAAGTTGCTTCGGGATGT GAAGCAACGTGCAATAAGATCTTGAGGCGAGCCTTTTATAACGTCCAAATTTTTCAAGAT TTGGAATGCTAAATAAAATTAGCCAATCAATAAATACAGTTGATTTCCCTTATTCGTTGT TGTATTTTTCAAGTTATTGAAACTTATTATGGGCTTGTTTAAGTTTGCCCCTAACCTTAT TTGAAATATTGTTCAAGAACGAACTAGCATCATTATTGAAAAAATAAATATTGCTCAGTA ATATTTCATAAAAAAAAAAAAAAAAA
Homology of Contig U35_23382 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |