barSeed - Barley Seed Development Database

Probe CUST_16844_PI390587928

Source Contig U35_23385

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16844_PI390587928	Hv_44K_v2	GTTTTCATTCGTGATCTTCCATCAGATACCAAAAGCAAGCAGGAATTGAAGAAAGCAGCG	634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248292.1	2766	2e-24	673 - 732	100	60 / 60	plus	ABC16317
MLOC	MLOC_14924.1	1214	2e-24	459 - 518	100	60 / 60	minus	None
MLOC	MLOC_14924.2	1249	2e-24	387 - 446	100	60 / 60	minus	None
JLOC1	JLOC1_10201.1	1332	8e-25	713 - 772	100	60 / 60	plus
Harvest21	ABC20115	697	3e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_23385	697	3e-25	635 - 694	100	60 / 60	plus

Contig Sequence (697 bp)

>U35_23385 697 Hv_44K_v2
TTCGGCACCGAGGGCCGCCACAGCAACCCAAGCCCTAAACCCCAACGCGCCCACCACCTG
CCCCGCCGCCGGCGAGATGGGCGGCGCTCGCTCGCAGGTCAACAAGGCGCACAAGACGCG
CTTCGCCTCGAAGGCCTCCCGCCACTCGCACAAGATCGATAAGGTCAGGAGCGGGAAGCC
GGTGGGCAGCCACCGCGCCGCAGTCAAGGGCGCCCGTGCGGCGCGTCTCCAGCACAGCAA
AGCGATTCGTGATCAGAAACGCGCAGCCTTGCTAAAGGAGAAGAGGTCATCTAATGGCTC
CTCGAGTGCACCCCGTATTATTGTTCTTTGTGGCCTTTCCTCATCTGCAAATGTTGGACC
ACTTGCAGAAGATCTTTTGACATTTGCAGCAGGAGGAGATGAGAAACTGACTTCCAACAC
CGTTGCCTCTCCTGCCTATAAACTTCGAACCACGGTACTGCAAGCACCATATGGCGATCT
CACCTCATGCATGGAACTGGCAAAGGTTGCTGATTTGTTAGCATTCGTAGTGTCGGCAAA
TTCATTATACAACAGCGATTCAGGCAATCCGGTTGATGAGTTTGGATCACAATGTCTATC
TGTTCTTCGAGCCGTGGGCTTACCTAGTACAGCTGTTTTCATTCGTGATCTTCCATCAGA
TACCAAAAGCAAGCAGGAATTGAAGAAAGCAGCGGTT

Homology of Contig U35_23385 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g19250.1	786	7e-109	protein\|AARP2CN domain containing protein, expressed
Brachypodium v1_2	Bradi1g41930.1	786	2e-113
Arabidopsis v10	AT1G42440.1	793	7e-69	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). \| chr1:15895528-15899939 REVERSE LENGTH=793