barSeed - Barley Seed Development Database

Probe CUST_16843_PI390587928

Source Contig U35_23386

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16843_PI390587928	Hv_44K_v2	TATATAAGCATATAGACACATGTGCTGGAATTTGGTGAAGAATGACAACCGGTCCTTCCC	512	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.612	1.718	1.170	0.805	0.334	0.435
Raw	714.977	1183.565	712.710	765.484	112.816	158.660

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC25214	577	3e-25	513 - 572	100	60 / 60	plus	ABC25214
Harvest35	U35_23386	577	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_23386 577 Hv_44K_v2
GACTGGACCAACCTTGTCGAGAGCGCCAAAGAGCGAAACCGTTATTTCAAGGTGCCAAAG
CCATTCACCGCGTTCTTTGCAGAGGATAATTTCAAAACCATGAAGGTGGAAAGACCTGTT
CCGGATGCGAGGATATCCGAGGCAATAGAAGCAATCAATGAAGTAGTTGCGAGGCAAGAA
GTGATGGACGCCGACGATGCTGGTGACCATCAAGCAGATGGAGATGATTATGACGCCATG
GAGGCTGACGATGGAGGGGGTGGTGATGATTGATTGTTGTCCTTGATCTATTGCTGGAGG
AGGAACTTTATCAGAGTCCGGGTACATAACATAGAAGAGCGAAGTTTTGCATGTTAGAAA
TTCTGTTATTCTTAGCAAATTTTAGGGGGTTAGAGGCTGGTGCACGTGGCTTGCCCGCCC
GACGAATCATCTACACTGACTCCATGCATACATTATTAAGGAACAAAAAATGTTAACCGC
AGAAGTGCAGCAGCTCTGGCTTCTGCTGTGTCTATATAAGCATATAGACACATGTGCTGG
AATTTGGTGAAGAATGACAACCGGTCCTTCCCTGGCT

Homology of Contig U35_23386 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None