- Probe CUST_16841_PI390587928
- Source Contig U35_23388
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16841_PI390587928 | Hv_44K_v2 | GTTAGTAGGCTGTTTTGTTGTTGAAATGTTATCCAGGCTGAGAATTAACGAAATTTCTTC | 409 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.605 | 1.811 | 1.188 | 1.006 | 0.460 | 0.444 |
| Raw | 564.428 | 1047.787 | 571.182 | 743.573 | 124.988 | 130.011 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72822.6 | 2551 | 2e-24 | 2485 - 2544 | 100 | 60 / 60 | plus | ABC22999 |
| MLOC | MLOC_72822.3 | 1696 | 2e-24 | 1532 - 1591 | 100 | 60 / 60 | plus | ABC22999 |
| MLOC | MLOC_72822.4 | 2518 | 2e-24 | 100 - 159 | 100 | 60 / 60 | minus | ABC22999 |
| MLOC | MLOC_72822.5 | 2622 | 2e-24 | 100 - 159 | 100 | 60 / 60 | minus | ABC22999 |
| MLOC | MLOC_72822.1 | 1985 | 2e-24 | 143 - 202 | 100 | 60 / 60 | minus | ABC22999 |
| MLOC | MLOC_72822.2 | 2056 | 2e-24 | 143 - 202 | 100 | 60 / 60 | minus | ABC22999 |
| JLOC1 | JLOC1_48460.3 | 2017 | 8e-25 | 1776 - 1835 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48460.2 | 2070 | 8e-25 | 1829 - 1888 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48460.1 | 2560 | 8e-25 | 2319 - 2378 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22999 | 486 | 3e-25 | 18 - 77 | 100 | 60 / 60 | minus | ABC22999 |
| Harvest35 | U35_23388 | 486 | 3e-25 | 410 - 469 | 100 | 60 / 60 | plus |
Contig Sequence (486 bp)
>U35_23388 486 Hv_44K_v2 CATGACCACGCCGGGGACAGCCCCGGAGGCTTGGCTGGATACATGAGCAGCTCGCCGGTG CACCCGGGCGGCGGTCACATGTTCTCGCAGGGCAACTACAACCCCTACCGCAGCCCACAG CCGCAGTACTCTCCAGCGCCTGTGCCTGTGCCTGTGCCGGTGGCCGGCAGGTACGACGCG CGTGGGGGTTACGCCCGGGGTGGCAGCTACATGGCGGCGCCGATGGTGCCAGCGCTCCGG TCTGGTCGGCCGGTCACCAGGAGCGGCGGGGCGCCGTACAGCGAGATGCAGACGCCGAAG AAGGCGGCGACGATATGGGACTGAGGGTTCCGCGGCGGTTCGGGGCCTTGGAGATGGAGG CAGTAACTTGCTTGAGATGTAAATTACATGGATACATCCATGCGGCCTTGTTAGTAGGCT GTTTTGTTGTTGAAATGTTATCCAGGCTGAGAATTAACGAAATTTCTTCAAAAAAAAAAA AAAAAA
Homology of Contig U35_23388 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |