barSeed - Barley Seed Development Database

Probe CUST_16839_PI390587928

Source Contig U35_35362

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16839_PI390587928	Hv_44K_v2	GCTCCATAGCTCATGAATCATACCCCACAAGTATAAGTTGTTACCTATTATGCACTTATG	695	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58430.3	2493	2e-23	489 - 546	100	58 / 58	minus	ABC20947
MLOC	MLOC_58430.4	2685	2e-23	489 - 546	100	58 / 58	minus	ABC20947
JLOC1	JLOC1_37958.2	2452	1e-23	1946 - 2003	100	58 / 58	plus
Harvest35	U35_35362	815	3e-25	696 - 755	100	60 / 60	plus

Contig Sequence (815 bp)

>U35_35362 815 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTTTCGATGATGCTCGAGCGGCCGCTCAATCACCTTGT
CGTGTCCGTTGCCGAGAGGGTCCGGAAAACGCCTGCGCAGGTTGCCTTACGCTGGGGGCT
TCAGATGGGTCAGATGGGTCAGAGTGTACTTCCAAGAAGCGCCAACGAAGGAAGAATCAA
GGAGAACCTTGACATATTTGATTGGTCCATTCCTGGAGAGCTGATGGCGAAATTCTCCGA
GATCAAACAGGTGAGGCTGGTGAAAGCGGAATTTGCAGTTCACCCTCTGAGCGGTTACAA
AACATTGCAGGACTTTTGGGATGGCGAAATCTAAAAAGCATGTGAACTTCTCCAGAGTGC
ACAAACAGGATGAGAGCTAGACACTGCATATGAAATAAGGAAAAAATCAAAGGCTGAAGC
AAGCATTGCAGCAACTTCTTCTCCTAAGACACCAACTAAGCAAGGTACTCAACCTACTAT
TGCAACTTCAAGCCCAATGACAAGGTTGAGGGCACCAGTCATTACAAGTGCCTCTTCACT
TCCAAGTGCATCTACAACAAGCAAAACTACTGATGCTAGCCCTCTTAAACAAGTTTAGTC
CATTTGCTTGTGAGAACTATGTGAGAAATGCAACTGGTACTTCTCTATGTTGAACTATTA
GTGTGACCCTTTTGGTGATGTTTGTGACAGCGGCCGCTCCATAGCTCATGAATCATACCC
CACAAGTATAAGTTGTTACCTATTATGCACTTATGCAGCATGTAATTTCAGATGCAAGAC
ATGCTGCAGTTTATCAGGGATTCGGTCTATCCCTG

Homology of Contig U35_35362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None