barSeed - Barley Seed Development Database

Probe CUST_16825_PI390587928

Source Contig U35_47349

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16825_PI390587928	Hv_44K_v2	TCACAGCACTCTGCTGTTCCTCAAGGACTCTTGGATATCATACAATCAATGCCTCACGAT	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358276	2696	2e-24	1293 - 1352	100	60 / 60	plus	ABC04350
MLOC	MLOC_10622.2	1319	2e-24	666 - 725	100	60 / 60	plus	ABC04350
MLOC	MLOC_10622.1	2051	2e-24	645 - 704	100	60 / 60	plus	ABC04350
JLOC1	JLOC1_6960.1	2154	8e-25	586 - 645	100	60 / 60	plus
Harvest21	ABC48322	536	3e-25	404 - 463	100	60 / 60	plus
Harvest21	ABC04350	2136	3e-25	550 - 609	100	60 / 60	plus	ABC04350
Harvest35	U35_47349	536	3e-25	404 - 463	100	60 / 60	plus
Harvest35	U35_15922	1899	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_47349 536 Hv_44K_v2
GACCGACTCCATGGATCGCACCGATCCCGCGCGGGGCCGCCTCGCGGTGCTCTCTTCCCA
CCTCCTCGCCGCCGGCGTGGAGGGCGCGGACCCCGCGGCGGCTTCACTGGAGAGGTCGCC
GGTCTCGGCCGCTTCCCCGGGGACCCGCGCCGGCGTGCTCGCCGTGGTGGACTCGAGGAC
CGGGAAAAGGTACGAGGTCAAGGTTTCGGAGGACGGCACCGTCCGCGCCACGGACTTCAA
GAAGATTACCACTGGAAAAGATGACAATGGTCTTAAGACTTACGATCCTGGTTATCCCAT
TGAGGAGGTGGCTGAAAGCAGCTCATTTGTTGAGGTCGCCTACCTCTTAATGTATGGGAA
TTTGCCTACTCAGAGTCAACTGGCAGGCTGGGAGTTTGCAATTTCACAGCACTCTGCTGT
TCCTCAAGGACTCTTGGATATCATACAATCAATGCCTCACGATGCCCACCCCATGGGTGT
CCTTGCCAGTGCAATGAGCACACTTTCTGTCTTCCACCCAGATGCAAACCCTGCTC

Homology of Contig U35_47349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13840.1	501	6e-68	protein\|citrate synthase, putative, expressed
Brachypodium v1_2	Bradi3g08910.1	507	2e-80
Arabidopsis v10	AT2G42790.1	509	2e-58	\| Symbols: CSY3 \| citrate synthase 3 \| chr2:17803132-17805991 REVERSE LENGTH=509