barSeed - Barley Seed Development Database

Probe CUST_16824_PI390587928

Source Contig U35_23390

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16824_PI390587928	Hv_44K_v2	AACGATCCGCCGGAGGATTCGAAGAAGAGCTTAGATAATAAGCCAAATGTTGTCGTTGCT	511	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.128	1.664	1.095	0.647	0.317	0.268
Raw	49.458	49.774	33.987	28.933	4.611	3.870

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372165	3510	2e-24	1616 - 1675	100	60 / 60	plus	ABC13519 ABC16583
MLOC	MLOC_6891.1	2597	2e-24	2018 - 2077	100	60 / 60	minus	ABC13519
MLOC	MLOC_6891.2	2447	2e-24	1980 - 2039	100	60 / 60	minus	ABC13519
JLOC1	JLOC1_4526.1	2363	8e-25	377 - 436	100	60 / 60	plus
Harvest21	ABC18927	687	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_23390	687	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (687 bp)

>U35_23390 687 Hv_44K_v2
TGGCTTCCCCCCGGCTGAGCCGCAGACCCCGCCGTTGCCCAGCAGCACCGGAGGCGGCGA
TGAGGAGGAGTTTATGCTGCAGAGACGCGCGCTCCCTCCCGCCGACCAGGCGAGCGACGG
CGGCGCAACCGCTGACGCCGCAGCCGCCGCCACCGCGCCGAAGAAGGTGGCCAAGCCCAA
GAAGGCCCGCAAGCGCGAGAGGGAGGAGCCGGCCGAGGACGTGGCCGACGCCGACGCCGA
GCCCAAGAAGAAGAAGAAAAAGAAGAAGCTCGCTGAACTCAACGGCGGCGTGCCCTCTGC
TGCCCCCTCCGGCGAGGGTGGCGGCGCTACAAAGCCCGCAGCTTTGTCGCCCCCCAAGGT
CGACCTTGACGGCTTAGATCTGAAACAGGTAATATCCGACCTTCAAAACCTTCCGCTGCT
TCCCTTCTACGGCGCCGGCAGACGCATCTCTGACGCCTCTCACTCCTTCATCCTGGCGTT
CCGCTCGAAACACTACAAAAAGAGCTATGAGAACGATCCGCCGGAGGATTCGAAGAAGAG
CTTAGATAATAAGCCAAATGTTGTCGTTGCTGCTGCTGCCGCTGCCGCCGCAGCCGTCTC
TGACGGTCAGTCCCCCAAACCGTTGAAGAAGAAGCCGGTCATGAGGCCCAGCGACCCCAC
CAGTGCTGGCGTCAAGCGCCCGCCATC

Homology of Contig U35_23390 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None