barSeed - Barley Seed Development Database

Probe CUST_16821_PI390587928

Source Contig U35_23393

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16821_PI390587928	Hv_44K_v2	ACTGCTCCTATGTCCAGCCCTACACGATCAACAGCGCCAAGGTGATCTTCCTGAAGCCGA	487	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.357	0.526	1.835	2.090	1.161	1.479
Raw	2.905	10.489	34.563	63.536	12.989	17.387

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61898.2	1245	2e-24	221 - 280	100	60 / 60	plus	None
JLOC1	JLOC1_40472.1	1594	8e-25	508 - 567	100	60 / 60	plus
Harvest21	ABC21019	604	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_23393	604	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_23393 604 Hv_44K_v2
CCCCTTCCCCCTCTCTCTCTCCACCTCCGCAGCTACAACAAGACAAGCCACATCTACATG
TACTCCCTCACGCGCCACCACCACTACTAAACCAGAGAGAGAGGGAGGGAGGGGGCAGAC
AGGAAGACAGAATTGGCCTGCCAAGAAAACAAAAGAGAGATCAAACCAAGAAGAGAATTG
GCAAGAAACAGAGAGAGAGAGAGAGTCGTCAAGAGGCAGCGAGAGAGAGAGAGAGAGCAG
GGGATCTAGAGGGAGATGGGGATGCGGGTGCCTGGTTGGGTTGGGGGTCTGGTGGAGGAG
AGCTTCTTCGTGGGGTGCGAGGCGCACGAGAGCCGCAGGAAGAACGAGAAGAACATCTTC
TGCCTCGCCTGCTGCACCAGCATCTGCCCGCACTGCGCCTCCGCCCACCGACACCACCCT
CTTCTACAGGTGCGGCGATACGTGTACAATGACGTCGTCCGCCTTGGTGACCTCGAGAAG
CTCATCGACTGCTCCTATGTCCAGCCCTACACGATCAACAGCGCCAAGGTGATCTTCCTG
AAGCCGAGGCCTCAGTCCAGGCCATTCAAGGGCTCCGGCAACGTCTGCCTCACATGTGAC
AGGA

Homology of Contig U35_23393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07650.1	242	2e-76	protein\|zinc-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g05380.1	237	3e-75
Arabidopsis v10	AT1G31040.1	243	2e-53	PLATZ transcription factor family protein \| chr1:11069793-11072182 REVERSE LENGTH=243