barSeed - Barley Seed Development Database

Probe CUST_16817_PI390587928

Source Contig U35_23398

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16817_PI390587928	Hv_44K_v2	AGCAAGGAGGTCAAGGTGTCGGTATGGTGGGACTTCCAGAAGTGCCAGCTTCCGCCCGAC	211	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14248.2	3090	2e-24	210 - 269	100	60 / 60	plus	None
MLOC	MLOC_14248.1	3854	7e-23	555 - 614	98	59 / 60	plus	None
JLOC1	JLOC1_9720.1	746	4e-23	17 - 76	98	59 / 60	minus
Harvest35	U35_23398	421	3e-25	212 - 271	100	60 / 60	plus

Contig Sequence (421 bp)

>U35_23398 421 Hv_44K_v2
AAAACCAGCCAGCCACCGCCCCCAGCTGCTGCCCGTGGCGCCGCCGCGGCGAGGAGCGAC
GCCGATGATCACGGCCATGTACCAAGCGCTTCCGCGCCGCGGAGGCCCCATCCTCGTCCT
CCGCCTCCGGGGGCTTCGCGGCCTCAGCTCGCACGCTGGCGGCGGCGAGCGGTGGAGGGG
GCAGCCCCAGCATCAGCAGCAGCAGGAGGAGAGCAAGGAGGTCAAGGTGTCGGTATGGTG
GGACTTCCAGAAGTGCCAGCTTCCGCCCGACGCCAACCCCTGCCGCGTGGCCCCGCGCGT
CACGGCCGCGCTGCGCGCCGCCGGCATCCGGGGCCCCGTCGAGATCACCGCCTTCGGCGA
TGTTTTCGTGCTCCCCCGCCCCGTCCAGGAGGTCCTCGCGGCCACCGGCGTCGCCTTCTC
G

Homology of Contig U35_23398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None