barSeed - Barley Seed Development Database

Probe CUST_16810_PI390587928

Source Contig U35_47355

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16810_PI390587928	Hv_44K_v2	TACAACTGCTGGAATGACTACGAAGGGGACTACACGACGCAGGCGTTCATGCTGGCGGAT	578	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8511.3	539	3e-22	170 - 228	98	58 / 59	minus	None
MLOC	MLOC_8511.1	1551	3e-22	779 - 837	98	58 / 59	minus	ABC19422
JLOC1	JLOC1_5657.1	1453	1e-22	702 - 760	98	58 / 59	plus
Harvest21	ABC48341	644	3e-25	579 - 638	100	60 / 60	plus
Harvest35	U35_47355	644	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_47355 644 Hv_44K_v2
GTCGATCGATAGCGTAGCGCTAGCTGCTCGGCGTGTTAGGCATGGCCTCCGAGGGTGGTG
ATGCCGACGTCGGCTTGTGCGGCGACTTCATGGAGCTGCGGCCGGACAAGGGCGGGGTTC
GCGACCTCGTCCACCTCCTGTGGTCGCCCAACGTCGCCGAGAACGGCGCCGTGGAGTGCC
CCGCCGGCACGGAGATCGGGTCGGCGCGGCGGCGGTGGGCCGTGTTCGTGTCGCTGGTGG
CGCAGATGCTGCTGCTGCGGGCCAAGCGGCCGGTGGCGCTGCTGGGGCGGGCGGCCGAGT
ACTGGATGAACCTCCTCAACGAGAACGGCGGCGGCGTTCTCCCTCTCCTCGCCAACGCCC
TGCATGGGAAGGTGAAAATGCCAGACAGAGCATCCCTGAACTACCGCTCCTGCATCGGGC
TACTCGACACGAGGATCGAGCTGGACAAGATGATCAAACCAGGGGACAGCAACTACCACG
CCGCCCTGTCGATCATGGCCGCGAAGCTGGCCTACGAGAACGAGCCCGTCATCAGCAGCG
TCGTGCAGAACCACTGGCACATGGAGTTCCTGGGCTTCTACAACTGCTGGAATGACTACG
AAGGGGACTACACGACGCAGGCGTTCATGCTGGCGGATGCGCCG

Homology of Contig U35_47355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52830.1	483	5e-99	protein\|lipase, putative, expressed
Brachypodium v1_2	Bradi3g57950.1	477	8e-115
Arabidopsis v10	None