barSeed - Barley Seed Development Database

Probe CUST_16802_PI390587928

Source Contig U35_47360

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16802_PI390587928	Hv_44K_v2	ACTCGCTCTACAACAACTACCTCTCGCAGACCAAGGTGTGCGACGAGATCAACAGCCGCA	129	GeneList: skyblue MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.379	0.390	3.116	3.649	1.590	1.214
Raw	10.138	15.138	110.943	197.329	33.025	26.748

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7985.1	2771	2e-24	579 - 638	100	60 / 60	plus	ABC16437
JLOC1	JLOC1_5289.1	2431	8e-25	330 - 389	100	60 / 60	plus
Harvest21	ABC48351	626	3e-25	130 - 189	100	60 / 60	plus
Harvest35	U35_47360	626	3e-25	130 - 189	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_47360 626 Hv_44K_v2
GGCTCCAAAGAACACTGCCGAGGATGGCCGCCGGCCGCCGCCTCCTCGTCCTCCTGGCCG
TGTCCCTCGCCGCCGTCGCCGCCACCCGCGGCCACAACATCACGGAGATCCTCGACGGCT
ACTCCGAGTACTCGCTCTACAACAACTACCTCTCGCAGACCAAGGTGTGCGACGAGATCA
ACAGCCGCAGCACCGTCACCTCCCTCGTCCTCACCAACGGCGCCATGTCCTCCCTCGTCG
CCAACCTCTCCCTCGCCGACGTCAAGAACGCGCTGCGCCTCCTCACCCTCCTCGACTACT
ACGACCCCAAGAAGCTGCACTCGCTCCACGGCGGCTCCGAGCTCACCACCACGCTCTACC
AGACCACCGGCGACGCCTCCGGGGACATGGGCCACGTCAACATCACCAGCCTCCGCGGCG
GCAAGGTCGGCTTCGCCTCCGCCGAGCCCGGCTCCAAGTTCCAGGCCACCTACACCAAGT
CCATCAAGGAGGAGCCCTACAACCTCTCCGTCCTCGAGGTCTCCGACCCCATCACCTTCC
CCGGCCTCTTCAGCTCCCCCTCCGCCGCCTCCACCAACCTTACCGCGCTCCTCGAGAAGG
CCGGCTGCAAGCACTTCGCGCGCCTC

Homology of Contig U35_47360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48490.1	432	1e-98	protein\|fasciclin-like arabinogalactan protein, putative, expressed
Brachypodium v1_2	Bradi5g18950.1	429	8e-102
Arabidopsis v10	AT3G60900.1	422	2e-65	\| Symbols: FLA10 \| FASCICLIN-like arabinogalactan-protein 10 \| chr3:22499573-22500841 REVERSE LENGTH=422