barSeed - Barley Seed Development Database

Probe CUST_16797_PI390587928

Source Contig U35_47366

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16797_PI390587928	Hv_44K_v2	TCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGAGGGCCAAGCGGAG	257	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.179	0.352	1.337	1.820	0.976	1.341
Raw	38.629	110.743	391.965	809.461	164.975	241.744

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6041.1	1680	2e-24	1013 - 1072	100	60 / 60	minus	None
JLOC1	JLOC1_3919.1	1663	8e-25	578 - 637	100	60 / 60	plus
Harvest21	ABC48363	621	3e-25	258 - 317	100	60 / 60	plus
Harvest35	U35_47366	621	3e-25	258 - 317	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_47366 621 Hv_44K_v2
CCTGCCCGAGAGAAGGGGCCTTGGACGGCGGCCGAAGACGCCCTGCTGGTGAACCACGTG
CGGCAGCACGGCGAGGGCAACTGGAACGCCGTGCAGCGCATCACCGGTCTCCTGCGCTGC
GGCAAGAGCTGCCGCCTGCGCTGGACCAACCACCTCCGCCCCAACCTCAAGAAGGGCGCC
TTCTCGCCGGACGAGGAGCTCCTCATCGCGCAGCTCCACGCCCAGCTCGGCAACAAGTGG
GCCCGCATGGCCACCCATCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAAC
ACGAGGGCCAAGCGGAGGCAGCGCGCCGGTCTGCCCATGTACCCGCCGGAGGTGCAGTTC
CAGCTAGCGATCACCAAGCGCTGCCGGTACGACGACTTCACGCCCCCGCAGCAATCAGCG
GGCGGCAATGTCCTGGACGCCACCGATGCAAGGTACACCAGCGCCCGCCCTCCGCCGCTC
GACCTCGCCGGGCAGCTCGCTATGGCCAACCGGCCGGTGCAGTTCCTCGCCCAGACGCCC
TTCTCCGCGCCGTCTTCCCCGTGGGTGAAGCCGACGTTCGCACGCAACGCGCGCTACTTC
CAGTTTCCGCATTCTTCGCCC

Homology of Contig U35_47366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38210.1	523	2e-122	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi1g32720.1	392	2e-66
Arabidopsis v10	AT2G32460.1	490	2e-64	\| Symbols: MYB101, ATMYB101, ATM1 \| myb domain protein 101 \| chr2:13782419-13784363 REVERSE LENGTH=490