barSeed - Barley Seed Development Database

Probe CUST_16793_PI390587928

Source Contig U35_35390

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16793_PI390587928	Hv_44K_v2	TTAAATAAATCAGCTGTTGACCGTGGGATGTTCCGTGGAGATATCTTCCAGACAGAGTGC	172	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.886	1.484	1.194	0.704	0.528	0.443
Raw	494.964	512.807	426.285	354.966	102.534	95.045

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375542	4060	2e-24	2440 - 2499	100	60 / 60	plus	ABC15852
MLOC	MLOC_15664.1	2962	2e-24	2049 - 2108	100	60 / 60	minus	ABC15852
MLOC	MLOC_15664.2	2448	2e-24	1354 - 1413	100	60 / 60	minus	ABC15852
MLOC	MLOC_15664.3	2287	2e-24	1200 - 1259	100	60 / 60	minus	ABC15852
JLOC1	JLOC1_10753.1	2786	8e-25	1049 - 1108	100	60 / 60	plus
Harvest35	U35_35390	661	3e-25	173 - 232	100	60 / 60	minus

Contig Sequence (661 bp)

>U35_35390 661 Hv_44K_v2
GGCGAATTGGGCCCTCCAGAAAATGCTCGAGCGGCCGCTGTTTCTTAAAGGGGACAGAGC
CAGCAGCTATTGACTACGTTGCTCTCAACGGAACAAATTCCAAAGGTTCCCTGCAGAAGG
TAAATATTCGTCTGCGTCGCAAGAGGAATCCTATAATTGGTGACAAGTCAATGCACTCTG
TCTGGAAGATATCTCCACGGAACATCCCACGGTCAACAGCTGATTTATTTAAAATCATGG
CATCCTCCATGTCATAACCTGTATATGATAGCACCGCAACAATGGCATTTGTTCCTGATG
GAAATTCATCCATGTGATATTTTTTATATGTGGCTGTTCGAACAATTGGTGACTGAGGGG
TCTGTAGATGGAATGCCTTGACATCTGTACGAAATTTTAAAGCTTGGCCACAAAAACCCA
TAGTTTGCTTTGCCATCTGGCACTGGTACATGTTCCGAGGACTTTGGTTGTGGTCAGACC
AAGGAGTCAGATTTGCAACTACACTGAGAATGGCGGTAGGGTGAATTTCTTCATGAGTTG
CAGGAAACTTTTCTTTTCTCCCACCGTCCCCACCATCAGGACATCGTATCTCCATAAATG
CCTGCTCAAATGGTCCAATAAGCTCAATATGTGGCTCTCCATCAGGTAGGCTAACCAGAT
T

Homology of Contig U35_35390 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35290.1	1036	9e-101	protein\|DNA-directed RNA polymerase I subunit RPA2, putative, expressed
Brachypodium v1_2	Bradi3g29917.1	1101	4e-109
Arabidopsis v10	AT1G29940.1	1178	9e-76	\| Symbols: NRPA2 \| nuclear RNA polymerase A2 \| chr1:10479322-10486670 REVERSE LENGTH=1178