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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16786_PI390587928Hv_44K_v2GCTTGCTGATTGTCAGTCACCCTTTGTATCCTCATTATGTGAAAGACTACTGATGCCAAA14GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6551.5761.0080.9120.3790.554
Raw 1970.3902958.2051659.0872381.105346.205544.162



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK249159.116927e-231636 - 169210057 / 57plus ABC40315 ABC48372
MLOCMLOC_19100.126493e-2148 - 1079758 / 60minus ABC40315 ABC48372
MLOCMLOC_19100.218163e-2148 - 1079758 / 60minus ABC40315 ABC48372
JLOC1JLOC1_13245.417872e-211715 - 17749758 / 60plus
JLOC1JLOC1_13245.317392e-211667 - 17269758 / 60plus
JLOC1JLOC1_13245.225952e-212523 - 25829758 / 60plus
JLOC1JLOC1_13245.125352e-212463 - 25229758 / 60plus
Harvest21ABC483724033e-2515 - 7410060 / 60minusABC48372
Harvest35U35_473714033e-2515 - 7410060 / 60minus



Contig Sequence (403 bp)

>U35_47371 403 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGCATCAGTAGTCTTTCACATAATGAGGATACAAAGGGTGACT
GACAATCAGCAAGCCAGCATCGTATCATTCCCCCGAGACAAAAAATACCACATCTTTCAA
TGTTTTCCGTCTCCCCTTGTGACGAAGAACTAGGTTACTCTAATAAAATCAAGCTACACC
AAAATGGCATCACATGTTTTACGCCTCAAAGTTTCTCTCCCTTTCGCACCCAAGATTAAG
CCGCTCTAATAAATTATTATTGAGTTACAAAAAGCACAGCACTGGCTGGCGCAGGACGTG
CAAGGTTACTGAAAGGCGCCTCATCCGAAAACCGCTGTCCTTAGCTAAGACTTAGTAGGC
TGGTGAGGAGATCAGCTCAGCATCACCGATCTGATGGCTGGAG



Homology of Contig U35_47371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None