barSeed - Barley Seed Development Database

Probe CUST_16777_PI390587928

Source Contig U35_47383

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16777_PI390587928	Hv_44K_v2	GCTGCTGGAGTTTGGTGCGACACAAAATCAGTAGTTACAACTCCAAGGACAGGAAGATAT	363	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375108	3843	2e-24	1295 - 1354	100	60 / 60	plus	ABC05295 ABC15479 ABC16730
MLOC	MLOC_36395.1	3601	2e-24	938 - 997	100	60 / 60	plus	ABC05295 ABC15479 ABC16730
JLOC1	JLOC1_23426.1	3643	8e-25	946 - 1005	100	60 / 60	plus
Harvest21	ABC48399	423	3e-25	364 - 423	100	60 / 60	plus
Harvest35	U35_47383	423	3e-25	364 - 423	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_47383 423 Hv_44K_v2
AAGCGTTCTCTGGCGGACGTTTGGGCCCTTGAAACTGCACCCAAGCCATATGAATGGAGG
AAACTTGAACCAGAAGGCGAAGGACCACCTCCTTGCATGTATGCAACTGCAAGTGCCCGC
TCTGATGGTCTTCTTTTGCTCTGTGGTGGGAGGGACACTAACAGTGTGCCTCTTTCAAGT
GCGTACGGTCTTGCAAAGCATAAGGATGGGCGCTGGGAGTGGGCAATTGCCCCTGGTGTC
TCTCCATCACCCAGATATCAACATGCAGCAGTTTTTGTCAATGCTCGACTTCATGTCTCA
GGAGGGGCGCTTGGAGGCGGTCGCATGGTAGAAGACTCATCTAGCGTGGCAGTGTTGGAC
ACTGCTGCTGGAGTTTGGTGCGACACAAAATCAGTAGTTACAACTCCAAGGACAGGAAGA
TAT

Homology of Contig U35_47383 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42310.1	1010	3e-90	protein\|serine/threonine-protein phosphatase BSL2, putative, expressed
Brachypodium v1_2	Bradi4g01410.1	989	7e-92
Arabidopsis v10	AT2G27210.1	1006	5e-89	\| Symbols: BSL3 \| BRI1 suppressor 1 (BSU1)-like 3 \| chr2:11630188-11636182 FORWARD LENGTH=1006