barSeed - Barley Seed Development Database

Probe CUST_16774_PI390587928

Source Contig U35_47387

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16774_PI390587928	Hv_44K_v2	ACGCATCGATGGTCGTGCACTAAACTAACGGTCCGTTATTGGTTGGTTAATGACCAATCA	570	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.194	0.175	0.443	1.816	1.785	3.617
Raw	2.608	4.750	16.347	106.317	34.645	78.308

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46394.1	810	2e-24	70 - 129	100	60 / 60	minus	None
JLOC1	JLOC1_30048.1	826	8e-25	682 - 741	100	60 / 60	plus
Harvest21	ABC48403	630	3e-25	571 - 630	100	60 / 60	plus
Harvest35	U35_47387	630	3e-25	571 - 630	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_47387 630 Hv_44K_v2
TCACTAAGAGGGCGGAAGCAGTGGTGTGGGCGCAGATGGGATCTGGAGGCCATGGGACGA
GCACACTATGCTTTGCCTGAAGGAGATGGAGTACGTGCGCCGGTTCCACCAGCATGAGCT
AGGCGCCAACCAATGCACCTCGTTCATCGCCAAGCACATCAAGGCACCCCTCCAAACCGT
TTGGTCAGTTGTAAGGAGGTTTGACAAGCCGCAAGTTTTCAAGCCTTTTGTAGAGAAGTG
TGTGATGCAAGGGAACATTGAGCCAGGATGTGTTAGAGAGGTCACTGTTAAAAGTGGGCT
ACCTGCTAAATGGAGCATCGAGAGGTTGGAGCTGCTCGATGACAATGAGCACATCCTCAG
AGTTAAGTTTATTGATGGTAATCACCCATTGAAGAACTATTCATCTATTTTGACGGTGCA
CCATGGAGTCATTGATGGCCACCCGGGAGCACTGGTGATTGAGTCATTTGTGGTCGACGT
CCCAGAGGAGAACACCGAAAATGAGATTTTCTACCTTGTTGGGAACTTTCTCAAGGTTAA
CCACAAGTTGCTTGCTGATGTGTCAGAGGGACGCATCGATGGTCGTGCACTAAACTAACG
GTCCGTTATTGGTTGGTTAATGACCAATCA

Homology of Contig U35_47387 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g33690.1	207	1e-79	protein\|CAPIP1, putative, expressed
Brachypodium v1_2	Bradi3g09580.1	211	5e-77
Arabidopsis v10	AT5G53160.2	188	1e-66	\| Symbols: RCAR3, PYL8 \| regulatory components of ABA receptor 3 \| chr5:21561026-21561953 FORWARD LENGTH=188