barSeed - Barley Seed Development Database

Probe CUST_16772_PI390587928

Source Contig U35_11570

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16772_PI390587928	Hv_44K_v2	GGCCAAGACTTGTCTATACTGTGTCATAGAATGGTGCATCTGTTTTCACATTTCATCCCT	618	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.601	1.377	1.112	1.001	0.383	0.409
Raw	572.807	771.044	553.200	770.133	106.331	121.805

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18353.1	1898	2e-24	1798 - 1857	100	60 / 60	plus	None
JLOC1	JLOC1_12701.3	1543	8e-25	1359 - 1418	100	60 / 60	plus
JLOC1	JLOC1_12701.2	1603	8e-25	1419 - 1478	100	60 / 60	plus
JLOC1	JLOC1_12701.1	1826	8e-25	1642 - 1701	100	60 / 60	plus
Harvest21	ABC23980	681	3e-25	619 - 678	100	60 / 60	plus
Harvest35	U35_11570	681	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_11570 681 Hv_44K_v2
AAACGTTTTGGTAGAGAATGTCCACATTTGGAGTTCGCGGCGAGGTGTGAGGATAAAGAC
TGCCCCTGGAAGAGGGGCCTATGTAAACAACATTGTCTACAGAAACATAACCCTAGAAAA
TGTCCGTGTTGGCATCGTGATAAAGACCGACTATAATGAGCACCCAGATGAACTGTTCGA
CCCGAAGGCTGTTCCTGTTGTCGGTAACATCTCTTATACGTCAATCCATGGGCAAAGGGT
GCGGGTACCCGTCAGGATACAAGGGAGCGCGGAGATCCCTGTGAGGAATGTTACTTTCCA
TGATATGTCAGTTGGCATACTTGACAAGAAGCACCATGTTTTCCAGTGCTCCTTCGTCCA
GGGGCAGGTGATCGGCTATGTTTTCCCTGTGCCCTGCAAGAACCTGGACCTGTACAATGA
GCGGCGCGAGATGGTTAAACAATCGACACTGCAGAACATTTCTGATATCGACTACAGTTT
CTGACACGGCGGTTTCAAGGTCTCACTGTACTATTTAGGAGTATCCAGTGATCAGCTTAG
TCTTGTTTTACTGCATACACAGGAAATTTTGTTTGTAGCTGTTTACACCTCCCTCTGTCT
CAGGCGTGTATTTAAAGAGGCCAAGACTTGTCTATACTGTGTCATAGAATGGTGCATCTG
TTTTCACATTTCATCCCTGTA

Homology of Contig U35_11570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26800.1	527	4e-97	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi4g31250.1	532	1e-104
Arabidopsis v10	AT3G42950.1	484	4e-73	Pectin lyase-like superfamily protein \| chr3:15015383-15017800 FORWARD LENGTH=484