- Probe CUST_16767_PI390587928
- Source Contig U35_11573
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_16767_PI390587928 | Hv_44K_v2 | GATGAGGATCATCGTTAGTTTGAGTCTGTTCTTGTTTTTGTATACTGTGGATTATTGAGT | 369 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_57111.1 | 1255 | 2e-24 | 279 - 338 | 100 | 60 / 60 | minus | ABC24068 |
JLOC1 | JLOC1_36966.1 | 882 | 8e-25 | 182 - 241 | 100 | 60 / 60 | minus | |
Harvest21 | ABC24068 | 479 | 3e-25 | 51 - 110 | 100 | 60 / 60 | minus | ABC24068 |
Harvest35 | U35_11573 | 479 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus |
Contig Sequence (479 bp)
>U35_11573 479 Hv_44K_v2 CCACATCGTCGTCTTCTTCTTCTCCCTCTTGACGCAGACAAGAAGTTTTCGATCTCTTTT CCGGGACCTGATGGAGAACAAGGAGGCTTCCGCGGTGCCGGAGAAGGAGGTGGCGTTGGC GGTGTCGTCGTGCTTCAAGAGGACGGTGGATGAGGACGCGTCGCTCCTGGAGAAGGCCAA GGACCAGTACAAGCAGTTCACGGAGGCGGAGGCGAGCGAGCACTGGGAGTGCATCAAGAA CAAGGTCAGCTCCATGTTCGCCGAGCCCATCCCCTTCTTCAGCGGAGGCGCCAAGGACCA CGGCTCCACCACCACGCCGTCCGTCGAGTCGCAGTAGATCGCCGCCGTCGTATATCGTTT GCTACTTTAGATGAGGATCATCGTTAGTTTGAGTCTGTTCTTGTTTTTGTATACTGTGGA TTATTGAGTTAATTATAATTTATAGTCTAAGTGATTATCTCGAAAAAAAAAAAAAAAAA
Homology of Contig U35_11573 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |