barSeed - Barley Seed Development Database

Probe CUST_16766_PI390587928

Source Contig U35_47502

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16766_PI390587928	Hv_44K_v2	CACCCAAGGACAACTTCTTAAGGAAGAATACACGCACAAATTTAAGGAGCTAAAGTCGAA	527	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.325	1.475	1.196	0.801	0.590	0.453
Raw	127.662	175.784	153.486	135.666	40.765	34.818

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74279.2	3096	2e-24	1325 - 1384	100	60 / 60	minus	None
JLOC1	JLOC1_49498.1	2112	8e-25	443 - 502	100	60 / 60	plus
Harvest21	ABC48617	654	3e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_47502	654	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_47502 654 Hv_44K_v2
TTGGCCCACACGCCCATCCCCTCCCCTCCCCCCTCCCCTGAATCTCGAGCTAATAAACCC
TAGAATTCCCGCTCCGCCGCCCCGCTCGACGCCCTGAACCCGAATCCTAGCAAGATTTGC
ATTTGCTATGTCTTTTGGGAGTTTTTCATAGAACAAGCCAGGTTACATAAGATGAGCACA
GGATTCAGCAAAGAGATCTTTGCGCAGAAGCTTGCGAAGCTTAATATTGCACAACAGAGT
ATAGAGACTTTATCACACTGGTGCATCTTCCATCATCGTTGCTGCCAGGAAGTTGTTGAC
ACATGGAATAGAGATTTTCACTCAGCTCCTCAAGAGAGAAAGATATCTTTGCTGTACCTT
GCAAATGATATTATGCAGAATAGTAAGAAGGATGGCATGAGATATATACATGAATTCTTG
AAGGTCATCGCTGCTGCCTTAGATGACTTGTTCACCAATGGTGATGATTTTGGACGGAAT
GTTGTGAAAAGACTGGTTGACATATGGGAAGATCGCAAGTTGTTTGGCACCCAAGGACAA
CTTCTTAAGGAAGAATACACGCACAAATTTAAGGAGCTAAAGTCGAAAAAAACAGGTGGA
GAGCTAGTGGAGAAGGGTATATTGAGCTATAAGCATATGTTGCGGGCACCTGTA

Homology of Contig U35_47502 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70060.1	491	8e-72	protein\|protein of unknown function, DUF618 domain containing protein, expressed
Brachypodium v1_2	Bradi2g59297.1	467	2e-89
Arabidopsis v10	None