barSeed - Barley Seed Development Database

Probe CUST_16764_PI390587928

Source Contig U35_47504

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16764_PI390587928	Hv_44K_v2	AGAGGCTGATCAATCTGATAGCAAATGTACTGTGTTTCATTCCTCCTGGCTTTCCTCTTT	508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42082.1	696	2e-24	115 - 174	100	60 / 60	plus	ABC29527
JLOC1	JLOC1_27314.1	745	8e-25	116 - 175	100	60 / 60	plus
Harvest21	ABC48621	649	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_47504	649	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_47504 649 Hv_44K_v2
CTACCATTCAATATGTCCATCTACAAATGGGCTACCGAGACTCGCCGTATTCTTGAGAAT
GCTGAACTACCAGATACTGTGAGTTTTTATAGCATACATGGGACATCTTATGAAACACCA
TATGATGTTTGGTAAGTATTGTGATGTCAAATAATAGTAACATCGTTAGTTTTTATACTG
TTCTAGGAATGAAAGTGTGAGATTCATCATTATTGTTGGTTAGGTACTATAACTCTAGCA
ATACTCATCAGTTGGGATCTTCTCATACAGTGGCTGATATGATTGAATAAAAATGAAGCA
ATTTCCTGTTTATGTTCCCTTCACAGTAGTCGACTTAGAGCAACTCTAGCAGACCCCGCA
TCCGCCCCCGACCCACAAAATAACCGCCAAAATGCGGGGTCTGCTAGAGTTTCTCTTAAT
CTTCAAAACAGGAGCTATCAGCTTATATTTCAGTATTTCTTTTCCTCCTGCAACGACAAC
CTGGAGTTGTTTTGTTGTAGATAAATTCAGAGGCTGATCAATCTGATAGCAAATGTACTG
TGTTTCATTCCTCCTGGCTTTCCTCTTTTTTTGCACAGCTATGGCTCTGAAAGCTCCCCA
ATTGGAGATCTCTCAGAAGTGTGCCGCACAGTGCCTACATACACATACG

Homology of Contig U35_47504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None