barSeed - Barley Seed Development Database

Probe CUST_16763_PI390587928

Source Contig U35_11576

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16763_PI390587928	Hv_44K_v2	GATACTTCTGGAACCTCCGGTGCTGAAAAGGTTGGTAATGGAAGTGCAGACTCAGATTAT	565	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.770	0.850	1.262	1.720	0.823	0.914
Raw	107.104	185.919	238.031	527.510	88.277	104.769

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372711	1779	2e-24	1111 - 1170	100	60 / 60	plus	ABC25585
MLOC	MLOC_37188.2	357	2e-24	22 - 81	100	60 / 60	minus	None
MLOC	MLOC_37188.1	1113	2e-24	572 - 631	100	60 / 60	minus	ABC25585
JLOC1	JLOC1_24047.1	1047	8e-25	278 - 337	100	60 / 60	plus
Harvest21	ABC23832	635	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_11576	637	3e-25	566 - 625	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_11576 637 Hv_44K_v2
CAAATTTGCTGGAAAGGTTCAAAAGAAAAAAGACAAAGAAGAGGAGTTCCAGGACCTTTC
TTCTGATGATATTGGGAAGATAAAAAGGAGAATAGCAAACATGCTTGAACCAGCAGAAAC
GATAATTCAAGCTTTGAAACGATTGAAGAGTACATCGACTGACAATCGTGGAAGAATGAC
CGAGGGGACCAAGCGCATATTTGATGAGCTGACAGAAGCTGCCATGAAGCTAATGGAGAA
TGGGGAGTACAATGTATATTCAGATGATCGGGAGACATTTGTACGCGAGGCTGAGGGTTA
TGAACGTCTAGCGCGTGCTCGACTTGGTATACCAGAAGTTGAAGAAGATATATTTGCAGA
CACCACAGAGAATGGCCCAACTACCACGTCCTTACTGGAGATGGACAGTGGTCCTTCAGC
TGCCAATATCTCTGCGACAATTGCTGTAGCAAATGATGATCATAGTAACTTTGACATGTT
TGGTGAAAATGACGACACTGATGTCAATCCTCATTCTGATGCAAAAACTATAGATTCAGG
TTCCAATCCCGAGACAGTACCACAAGATACTTCTGGAACCTCCGGTGCTGAAAAGGTTGG
TAATGGAAGTGCAGACTCAGATTATGTCTACGATCCA

Homology of Contig U35_11576 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20590.2	402	2e-93	protein\|CD2-binding protein-related, putative, expressed
Brachypodium v1_2	Bradi4g29190.2	381	3e-105
Arabidopsis v10	None