barSeed - Barley Seed Development Database

Probe CUST_16761_PI390587928

Source Contig U35_11577

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16761_PI390587928	Hv_44K_v2	AGAAAGCAGATCGACAGCCGGCGGCGAGCTCGGTAGGTTGGTAGGTAGTGGCTATGGAGG	84	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56414.2	1599	7e-23	96 - 155	98	59 / 60	plus	ABC06732
MLOC	MLOC_56414.1	2080	7e-23	1960 - 2019	98	59 / 60	minus	ABC06732
JLOC1	JLOC1_36480.1	2235	4e-23	2115 - 2174	98	59 / 60	minus
Harvest21	ABC25348	616	3e-25	85 - 144	100	60 / 60	plus
Harvest35	U35_11577	616	3e-25	85 - 144	100	60 / 60	plus

Contig Sequence (616 bp)

>U35_11577 616 Hv_44K_v2
CTTGGAGGCCAGCATCACCACCGCCTGGCGCCCGCCCCACCCACGAGCGCCACCAACCAC
ACACCCTCCACCGCCACCGCCCAAAGAAAGCAGATCGACAGCCGGCGGCGAGCTCGGTAG
GTTGGTAGGTAGTGGCTATGGAGGCCGCTGCAGCCATCCGGAGCACGGCCGCGCCGCGGA
TGCCCCTCGCTGGGAGGAGCAGGGGACCCGGCACCGCGGCGGCGCGCGCGATCCCGGGCA
GCCGCGGCGACTGGCAGACGGCCTGCGCCATCCTGTCCAGTACCAACGACACCCCCACCC
CGCCGGCGCCGAAGGTGAACGGCCAGAACAGCAACAAGCTGGCCGCGCCGGCCATCCCCG
GCTCCGAGGACGCCGCCTCCAGCCTGGATCTGGTGCCGGCCGCGGGCGCGGGGAACCTGC
CGCGCCCGCTCAGCATCAGCGACCTGTCCCCGGCGCCGCTGCACGGCGCGCAGCTCCGGG
TGGCCTACCAGGGCGTGCCGGGCGCCTACAGCGAGGCCGCGGCCGGCAAGGCGTACCCGG
GGTGCGAGGCCATCCCGTGCGACCAGTTCGAGGTGGGCGTTCAGGCCGTGGAGCTCTGGA
TCGCCGACCGCGCCGT

Homology of Contig U35_11577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g38380.1	416	9e-52
Arabidopsis v10	None