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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16759_PI390587928Hv_44K_v2CTATCTATACTGGCTCAGAGTTCATAGCCACTGCATGTGGTGAAGAAGATTTTGGCCTTG385GeneList: darkorange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0000.9611.9031.5220.8070.763
Raw 205.374289.417524.940637.224121.642129.294



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK250641.133663e-211663 - 17229758 / 60plus ABC03738 ABC03741
MLOCMLOC_75685.319903e-211533 - 15929758 / 60minus ABC03738 ABC03741
MLOCMLOC_75685.229563e-211632 - 16919758 / 60minus ABC03738 ABC03741
MLOCMLOC_75685.130103e-211684 - 17439758 / 60minus ABC03738 ABC03741
JLOC1JLOC1_50492.230262e-211268 - 13279758 / 60plus
JLOC1JLOC1_50492.126002e-21842 - 9019758 / 60plus
Harvest21ABC486284623e-25386 - 44510060 / 60plus
Harvest21ABC0374120906e-22419 - 4789758 / 60plusABC03741
Harvest35U35_475084623e-25386 - 44510060 / 60plus
Harvest35U35_1456120906e-22419 - 4789758 / 60plus



Contig Sequence (462 bp)

>U35_47508 462 Hv_44K_v2
AACTNGTGGAGGCCCCGGGCAGTGGGGTTGGAGAGCACTCTAGGAGATGCATATGAGAGA
TTTAAGAAAGCCGCNGATGCTGTCAAGGAGAATGGCGGGACTGTGCTTAGTGGCCGGGAG
GCATGGGGGCTGGGGGACACCTATGGCTATCCAATGGATTTGACTGAGGTCATGGCAGTA
GACTTCGGGCTATCTGTNGACATGGAGGGTNNNAATATTGTTTTGGAAGAAGCAAGACAA
AAGGCTAGAAATGCTCGCGGGGGGGCTGGTGGCAAGTCTANGGGCCTGGANGCTAATGCT
ACATCGCACCTGCGCAATGAGGGGCTTGCCAGCACAAATGATAGCCCGAAATTCAAACAC
GAGGTGCATANCAGTGGGGTAAAAGCTATCTATACTGGCTCAGAGTTCATAGCCACTGCA
TGTGGTGAAGAAGATTTTGGCCTTGNNGGGGAAAGCACAAGC



Homology of Contig U35_47508 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None