barSeed - Barley Seed Development Database

Probe CUST_16758_PI390587928

Source Contig U35_47509

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16758_PI390587928	Hv_44K_v2	CTACAGTTGCTTGACGATGTTGCTAGCCATACTCAAGGTCCATACATGGAGAAAATGGGA	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72783.5	2265	2e-24	1326 - 1385	100	60 / 60	plus	None
MLOC	MLOC_72783.8	1968	2e-24	361 - 420	100	60 / 60	plus	None
MLOC	MLOC_72783.3	2367	2e-24	1351 - 1410	100	60 / 60	plus	None
MLOC	MLOC_72783.1	2884	2e-24	1460 - 1519	100	60 / 60	plus	None
MLOC	MLOC_72783.6	2368	2e-24	1326 - 1385	100	60 / 60	plus	None
MLOC	MLOC_72783.7	2263	2e-24	1326 - 1385	100	60 / 60	plus	None
MLOC	MLOC_72783.4	2073	2e-24	1326 - 1385	100	60 / 60	plus	None
MLOC	MLOC_72783.2	3983	2e-24	1356 - 1415	100	60 / 60	plus	ABC06786 ABC06787
JLOC1	JLOC1_48431.6	2876	8e-25	1348 - 1407	100	60 / 60	plus
JLOC1	JLOC1_48431.5	2462	8e-25	934 - 993	100	60 / 60	plus
JLOC1	JLOC1_48431.4	2821	8e-25	1348 - 1407	100	60 / 60	plus
JLOC1	JLOC1_48431.3	2869	8e-25	1348 - 1407	100	60 / 60	plus
JLOC1	JLOC1_48431.2	2863	8e-25	1348 - 1407	100	60 / 60	plus
JLOC1	JLOC1_48431.1	2449	8e-25	934 - 993	100	60 / 60	plus
Harvest21	ABC48632	524	3e-25	465 - 524	100	60 / 60	plus
Harvest35	U35_47509	524	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_47509 524 Hv_44K_v2
TTTAGATGCGGCACGAGGCTAAACCTCCTCGTCGCCGCCTCCCTCATCGTCGAGCGCTCC
ATCCACCGCCTCAGCAACTGGCTGAAGAAGACTCACCGGAACCCGCTCTACAAGGCAATG
GAGAAGATNAAAGAANAAATGNNGCTTCTCGGCTTCATATCCCTGCTTTTAGCGGCGACG
TCGAGGATCATCTCCGGTATTTGCATCGACACCAAGTACTACAACAGCAGGTTCTCCCCG
TGCACCAAAGAGGAGGTCGAGGAGTAACTGAGCGCCGAGCACGCCCTGACCCGCAAGCGC
AACCACGTAATCGATGCCATCCTGCATCGTTCTCTCAGGAGGAACCTTAAGGCTCANTAC
CATCAAGTTCAGGCTTGCCACGAGGGCTTNGAGTCGTTNGTTTCGCATGAGGGTCTGGAG
CAGCTCCACCGCTTCATATTTGTCATGGCAGTAACCCATGTTACCTACAGTTGCTTGACG
ATGTTGCTAGCCATACTCAAGGTCCATACATGGAGAAAATGGGA

Homology of Contig U35_47509 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g26435.1	589	2e-81
Arabidopsis v10	None