- Probe CUST_16755_PI390587928
- Source Contig U35_23552
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16755_PI390587928 | Hv_44K_v2 | CCCCGATAATGCCCAAACATCTGGGATTTGTCATTTCCACACTATTATATATATCCCTAT | 351 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.157 | 0.208 | 0.839 | 2.391 | 1.766 | 2.202 |
| Raw | 93.033 | 187.862 | 673.331 | 2585.943 | 809.413 | 1093.221 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18213.2 | 440 | 2e-24 | 236 - 295 | 100 | 60 / 60 | plus | ABC18795 |
| MLOC | MLOC_18213.1 | 396 | 2e-24 | 321 - 380 | 100 | 60 / 60 | plus | ABC18795 |
| Harvest21 | ABC18795 | 447 | 3e-25 | 352 - 411 | 100 | 60 / 60 | plus | ABC18795 |
| Harvest35 | U35_23552 | 447 | 3e-25 | 352 - 411 | 100 | 60 / 60 | plus |
Contig Sequence (447 bp)
>U35_23552 447 Hv_44K_v2 TGCATTGCTTCCTGACACCTCAAATTAGTAACCCAACTGCTCCACCGATGGCTTCTAAGA TCACCAGTGCCATGGTCATGTATGTATTGATTCTGGCACTCCTTGCATATTCAGATGCAA GGCGTTGTACCCAACACCCAGCCAAGGTTCCAAATTGCATTGGTGGAATTGACAAAAACT GTGTGAAATGTTGCAATGGCGAAGGCTACCGTTACGGAGTATGTGCACCCACATGCAAAT GCTCTCACTGCGGACCTGGATCATATCTCGATGAAAATGCAAAAATACAGTAAGACTTAA GTTTGTAACTAGCATGGACCAATAAGAGGATCAAGTATATTACTATTTCGACCCCGATAA TGCCCAAACATCTGGGATTTGTCATTTCCACACTATTATATATATCCCTATCATTTTGAA AAATTTCTATAAAAAAAAAAAAAAAAA
Homology of Contig U35_23552 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |