- Probe CUST_16754_PI390587928
- Source Contig U35_23553
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16754_PI390587928 | Hv_44K_v2 | CTGTATATATGTCCGCATGTCATATACTCCATCTGGTATTGTAAGCTCCCTTTGTCCTTC | 476 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.244 | 0.208 | 0.619 | 2.083 | 1.977 | 3.340 |
| Raw | 142.409 | 170.919 | 480.645 | 2341.863 | 857.802 | 1577.894 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_2633.1 | 787 | 2e-24 | 684 - 743 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_1569.1 | 627 | 8e-25 | 524 - 583 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20651 | 536 | 3e-25 | 477 - 536 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23553 | 536 | 3e-25 | 477 - 536 | 100 | 60 / 60 | plus |
Contig Sequence (536 bp)
>U35_23553 536 Hv_44K_v2 GCAAACTCGAACGCTAAGTTAAGTACCATGGCCAGCAGCACCAACGACGTGCGGAGGACA GTGCGGGAGAGACCGGTGGTGGTGGTGGGGCGGCCGGGGTGCTGCTTGGCTCTCGTGGCC CAGCACCTGCTCCTGCGTCAGGGCGTGAACCCGGCGGTGCTGGAGGTCAGCTACGACGCC GACCCGGCGGCGCTCATCTTCGCGCTCCGTTCCAAGGACGACAACACCAAGTTGATCACC GACGTCGCCTTCCCGGTGGTGTTCACCGGGGGCAGGCTGTTGGGTGGGCTAGACCGACTC ATTGAAATGCACATCGCCGAGGAGCTCGTGCCGCTCTTGAGGCAGGCAGGAGCCCTCTGG GTCTGAACCGACCTTGCTTCATGACCCGCTGCCAGTTAATGCATGCCAGACTGATCGGTT ATAGTTAAGCTTCCATTCCATGTGTGCGAGTGATTTGTTTCCTGCTTTTTTCTTCACTGT ATATATGTCCGCATGTCATATACTCCATCTGGTATTGTAAGCTCCCTTTGTCCTTC
Homology of Contig U35_23553 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |