barSeed - Barley Seed Development Database

Probe CUST_16749_PI390587928

Source Contig U35_23558

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16749_PI390587928	Hv_44K_v2	ATGCACCAGAAAGATACGATCCGGAAGAGGAGGAAGAGGATGGCCACCATACACGTCGCC	704	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252122.1	2039	2e-24	708 - 767	100	60 / 60	plus	ABC49907
MLOC	MLOC_80672.1	2060	2e-24	1303 - 1362	100	60 / 60	minus	ABC49907
MLOC	MLOC_80672.3	2310	2e-24	1249 - 1308	100	60 / 60	minus	ABC49907
JLOC1	JLOC1_53715.1	2406	8e-25	835 - 894	100	60 / 60	plus
Harvest21	ABC39020	706	3e-25	192 - 251	100	60 / 60	plus
Harvest35	U35_23558	1219	3e-25	705 - 764	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_23558 1219 Hv_44K_v2
TTGGGTACCGGGGCCCCCTTCTGGTACCACATTCATACCTACATACATCCATTCGTCATC
AGCATCCGCTCACCAGCTTGTGAGGGGAAGACGAAGCTGGGAAGAAGGTCGTGTTTGAGC
ACACGAAGCTGGGGAACAGAGCTTGGCGCTAGCTAGCTTGCCGGTGCAAGATGAGGAGCC
GTGGCTTTGCTCTGAGCCATGCCGCGGTGTTTCTCGCGTGGTGGATGGTGCATTGCGGCG
GCGGGCTTGTCGCCGCCGTGCCTCCTGATGGTTGGTACGATTACACTGCCCACACGGACT
GCAGAGGTCACCCGGAGCCGGCGCAGTACAACGGCGGGATTCTGAAGTACGGCAACGGCG
AGGACCCGAACGGGTACAAGACGACGGAGACCGGCGTCCTGTCCCCGGCGTTTGTGGTCT
ACAACCTCAACAAGTCCACAATGTACACCTTCTCGGGTTGGGTGAAGCTGGAGGGCTCTT
CCTCGGCTCTGATCACCGCGAGGCTGGCCCCGGACAACTCCGGCACACGGTGCATCGGCA
CGGTCCTCGCCAGGAGCGACTGCTGGGCGTTCCTAAAGGGTGGCTTCGTCCTCGACTGGC
CAACTCAGACCTCCGTCATCTTCTTTCAGAATGCTGATAGGACCCCCATGAAGATCACCA
TTGCGAGCGGCTCGCTCCAGCCGTTCACGACGGATCAATGGTCGATGCACCAGAAAGATA
CGATCCGGAAGAGGAGGAAGAGGATGGCCACCATACACGTCGCCGACCCGCACGGCACCC
GCGTGGTGGGCGCGTCGGTGTCCGTGCAGCAGACCGCCAAGGACTTCCCGTTGGGGTCGG
CGATCGCCTCCACCATCCTGGGAAACGACGCGTACCAGAAATGGTTCGTGGAGCGGTTCA
ACGCGGCGGTGTTCGAGGACGAGCTCAAGTGGTACTCGACGGAGCCGGCGTCGGGGCTGC
TCCGGTTCGACGTGCCGGACCAGATGCTGGCGTTCGTGCGGTCGCACCGGGTGATGGTGC
GCGGGCACAACATCTTCTGGGAGAACCAGGACGCGACGCCCCGTTGGGTGAAGGGCCTGT
CGCCGGAGGACCTCCGGTCGGCCGTGAACACGCGCATCCAGAGCCTCATGACCCGGTACC
GCGGCGAGTTCGCGCACTGGGACGTGAACAACGAGATGCTGCACTTCAACTTCTACGAGC
AGCGGCTGGGCCCCAACGC

Homology of Contig U35_23558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14010.2	559	0.0	protein\|glycosyl hydrolase family 10 protein, putative, expressed
Brachypodium v1_2	Bradi1g68310.1	564	0.0
Arabidopsis v10	AT4G38650.1	562	2e-113	Glycosyl hydrolase family 10 protein \| chr4:18063377-18065769 FORWARD LENGTH=562