barSeed - Barley Seed Development Database

Probe CUST_16745_PI390587928

Source Contig U35_35534

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16745_PI390587928	Hv_44K_v2	ACCTTGTAATTTCCCCTATAATATCTTGTTCCCCTTGTAGGACCTTTTGATTCATAATAG	232	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.146	2.079	1.580	0.546	0.196	0.144
Raw	98.088	149.084	96.350	54.768	6.246	4.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80545.1	2743	2e-24	2210 - 2269	100	60 / 60	plus	None
JLOC1	JLOC1_53630.1	2901	8e-25	2204 - 2263	100	60 / 60	plus
Harvest35	U35_35534	374	3e-25	233 - 292	100	60 / 60	plus

Contig Sequence (374 bp)

>U35_35534 374 Hv_44K_v2
ATGCATTTAATATATGAGCTATGGATGTATGTCCAGATGGGTCAATATAATTTTTGTCAT
AGTTACTCTGATAGGGCATTTGCTGTTATTTCATCTCTTATATGTAGCATGTTGACCGGA
AATATTCTTCTGAAATAATTTGACAATGATATCAAATTTAAGGCCCGTTTCTTGAAACAT
TCACCCTTGTCTAAAGGGCTTTTGTTGCTAATTTGTTTCTTGGTATGTCTGAACCTTGTA
ATTTCCCCTATAATATCTTGTTCCCCTTGTAGGACCTTTTGATTCATAATAGTATGAAAC
ATATAGAATTGTTTTAACCACAATCATAACTTTCAGCTTAAAACAAAAAAAAAAAAGAAA
AAAATCAACCTTTT

Homology of Contig U35_35534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None