barSeed - Barley Seed Development Database

Probe CUST_1673_PI390587928

Source Contig U35_14042

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1673_PI390587928	Hv_44K_v2	TTGCTACAATTGTATTTTGTCTTGATTGTAGTGGAAGTGAGCTGCTTATACGCTATTTTC	969	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20175.1	611	2e-24	531 - 590	100	60 / 60	plus	ABC00201 ABC00204
Harvest21	ABC00201	1055	3e-25	958 - 1017	100	60 / 60	plus	ABC00201
Harvest35	U35_14042	1067	3e-25	970 - 1029	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_14042 1067 Hv_44K_v2
GAAGCAAGCTCCCCCACTCCAGTTCAATACACCCGAGCAGCCTCTCCGATCTCCCAGCCC
CTCCCGCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACGGGCGGCAAAGCCCCGC
GGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCCCCGGCGACCGGCGGCGTGAAGA
AGCCGCACCGCTTCCGCCCGGGCACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGA
GCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTCCGCGAGATCGCGCAGG
ACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCCCTGCAGGAGGCCGCCG
AGGCCTACCTCGTCGGCCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCG
TCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGAGGGGAGCGCGCCTAGG
CGTCTCGCTTGTCAGTGCTAGGTGTTTAGGATCTGTTCCCGTCGTGTTCTATGTGTGCGT
CGTTCCTATGCAACTAGCTTGTTGCTGTGCTTCGATGCTCCAGCTTATCAATGAAATATG
GCTGCCAGGATGAGATAAATCCCTCTAAAAAAAAAAAAAAAAACCGTGCTTGTCTTCACC
CTCTGAATTACTGGCAATAGCTGGTTTGTCAGGCGTTCTGAAATCTGAATGCATCTTTCC
AGCGGACCTAGTTGAAATTAAAATCGCGGCTGTTGTGGGTGGTTTCTGTGTGGGTGGGTG
CCAAATTATTTAGAATTAATAATGTGTAGATTTGATTCAGCTGTGGCAAAAATGTTCAAC
CACGGTGCTTGTAAATGAGGGGTTAAAATTTATTTGCAGTTTGGCCTGAATGTTGTGCTT
AAATCGGTCTGACATTGTTTTGTTAGCTTCAAACCTCTGCTCCTATAAGCCTACAAGAGA
AGCATGCTTTTGCTACAATTGTATTTTGTCTTGATTGTAGTGGAAGTGAGCTGCTTATAC
GCTATTTTCAGAATATATTTTCATCTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14042 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	8e-87	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-87
Arabidopsis v10	AT5G65360.1	136	4e-87	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136