barSeed - Barley Seed Development Database

Probe CUST_16738_PI390587928

Source Contig U35_11582

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16738_PI390587928	Hv_44K_v2	GGAATTGTAAAGTACGAGGTAGTAAGTGATGTAGGAGTAGCACTTGATTACGTCTTTTTT	299	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.849	3.138	1.022	0.710	1.623	0.758
Raw	22.591	38.579	11.537	11.618	7.757	3.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362499	3231	2e-24	3065 - 3124	100	60 / 60	plus	None
MLOC	MLOC_54886.2	1682	2e-24	341 - 400	100	60 / 60	plus	ABC11500
MLOC	MLOC_54886.3	1900	2e-24	333 - 392	100	60 / 60	plus	ABC11500
MLOC	MLOC_54886.1	515	2e-24	342 - 401	100	60 / 60	plus	None
JLOC1	JLOC1_35356.3	3820	8e-25	2253 - 2312	100	60 / 60	plus
JLOC1	JLOC1_35356.2	3913	8e-25	2346 - 2405	100	60 / 60	plus
JLOC1	JLOC1_35356.1	3916	8e-25	2349 - 2408	100	60 / 60	plus
Harvest35	U35_11582	530	3e-25	300 - 359	100	60 / 60	plus

Contig Sequence (530 bp)

>U35_11582 530 Hv_44K_v2
CGGCCCTGCATGGCGGAGGTGGTGAAAGAGGTGCAGGAGGCCATCGCGCTGGAGCGTCCC
CCAAGCAAGGCGTCGGAGCGGCGGGCGTCGTTCCCGTTCTCGCCGGCGGGGGCGCGGTCG
GGGACGGTGCGGTCCCACGACATGATAATGGGCAACCTGATGCGGGAGGAGGAGGAGCCG
AGCTCCTTCCCCAACACCCTCCGACACCCCGAGCTGCGGTGATAATTCCATGGTGGACTC
GTTTCGTTTCGTTTCAGAAAAAAAATTATCTAGTTTTGTTCATGTGGGTTCCCATTTTTG
GAATTGTAAAGTACGAGGTAGTAAGTGATGTAGGAGTAGCACTTGATTACGTCTTTTTTT
TTACTGTACTAGACTAGAAGGAAAGAAAAAGGTGTTGAATTTGTATTGGCACGGCACGGC
ACGGGGAGTGAGGTAGTAGGCAGTATACAAAAAGATTGGTTTTTTCTGGTCCTGGTCCTA
AAAAGAAACTGTTTTTGTTTTAAAAAAAAAAAAAAGAAAAAAAAAAAAAA

Homology of Contig U35_11582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None