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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16737_PI390587928Hv_44K_v2GCACAATATCACTTGAACCGCTCATTATTTTTTGGGCCGAGAGATAACTGTTGTTGTTGC534GeneList: tan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.7340.7761.7682.1100.7581.043
Raw 89.422145.415296.259561.13070.918107.961



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36055810953e-22355 - 4139859 / 60plus ABC03970 ABC03971
MLOCMLOC_52423.15253e-2293 - 1519859 / 60minus ABC03970
MLOCMLOC_52423.23053e-2254 - 1129859 / 60minus ABC03970
MLOCMLOC_52423.43763e-2254 - 1129859 / 60minus ABC03970
MLOCMLOC_52423.33763e-2254 - 1129859 / 60minus ABC03970
JLOC1JLOC1_33592.23971e-22263 - 3219859 / 60plus
JLOC1JLOC1_33592.11871e-2253 - 1119859 / 60plus
Harvest21ABC486346833e-25535 - 59410060 / 60plus
Harvest21ABC0397011045e-23351 - 4099859 / 60plusABC03970
Harvest35U35_475116833e-25535 - 59410060 / 60plus
Harvest35U35_1578811045e-23351 - 4099859 / 60plus



Contig Sequence (683 bp)

>U35_47511 683 Hv_44K_v2
GCAACATCCCATTAAGCTGCAGGCCGGAGGATCTTAGAGTTCCTTTTGAAAGGTTTGGTC
CTGTTCGGGATGTGTACCTGCCAAAGGATTATTACACCAGAGTCTTGTCCCAATGAAGAA
GTTCTTCTATGAAGACAAAGATTTGTTTTGAGAAAATTAGTTTCGTGAAGAGAAGATAAG
AGAGTTGTATTGGGTAGTCCATGAGAAGATTAAATGAAGCGAAGTTCATTTCAAGTACTT
TTGAGACTTTTCAAACATTGAGGAACTTGAAGCGAATGATTTTACGAAGATACTCTTTAT
GAGGATCACCGTACTTAGTCATTATACAAGAAATTTGTACAAGAAACTTGGATACTAGGA
CCTGGACATATAGCTGTGTTTTGCAACACTTGCTTCACGTTTGATGGGAAATGTGTGTAA
GTTGTTGACTGTGCTTCGTCAAGAATCATAGAGGGCACACTGCATTTGAACTGTGATGGG
AACCCCGAGGGTTTGCATTTGTNGGAGTTTGTTGACCCTTATGATGCATCTGATGCACAA
TATCACTTGAACCGCTCATTATTTTTTGGGCCGAGAGATAACTGTTGTTGTTGCTGCCGA
GTCACGGAAAAGGCCAGATGATATGCGTAATAGAGCTAGAGTCAGGGGGTANTTCTGGTG
AACCTGAAAGGCGTAATTCTCGT



Homology of Contig U35_47511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None