- Probe CUST_16727_PI390587928
- Source Contig U35_47516
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16727_PI390587928 | Hv_44K_v2 | ATGATATTTGTGTTGTGATTGTAGCGAGTGCCTCGCTAGTTTCAGTGCATCTTCTCGTGC | 312 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.449 | 1.280 | 1.162 | 0.883 | 0.370 | 0.372 |
| Raw | 3702.097 | 5167.587 | 4074.050 | 4843.893 | 711.226 | 784.883 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_36545.1 | 1086 | 5e-22 | 876 - 937 | 97 | 60 / 62 | plus | |
| Harvest21 | ABC02461 | 891 | 2e-22 | 801 - 855 | 100 | 55 / 55 | plus | ABC02461 |
| Harvest35 | U35_47516 | 408 | 3e-25 | 313 - 372 | 100 | 60 / 60 | plus |
Contig Sequence (408 bp)
>U35_47516 408 Hv_44K_v2 TTGGGTCTTGCCCGTTACTACAAGCGCACCAAGAAGCTCCCGCCCACCTGGAAGTACGAG TCTACCACAGCCAGCACTCTGGTGGCTTAGGAGGGCTCTTCATCTGGTGTGCTCTTACCA GCCTCAGGATGGTCTTGTTCTACATATCATCAATTTTATGTAACGCTTTTGAGTTTGGAG CGATTTAGATGAACAAGAGACCAAATTTTCTATGTTTACTCGGAGAATCCCATAAACCAT TTTTGGTTTTGCAGTTCTGTCTGGTTACTTTNGGCATGCATCCACATTTCATTCAGTTAA ACTTTNGACGTCATGATATTTGTGTTGTGATTGTAGCGAGTGCCTCGCTAGTTTCAGTGC ATCTTCTCGTGCCCGAATGGTTTGACTGACTAAAAAAAAAAAAAAAAA
Homology of Contig U35_47516 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |