barSeed - Barley Seed Development Database

Probe CUST_16721_PI390587928

Source Contig U35_23561

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16721_PI390587928	Hv_44K_v2	CACGCACGCACGGTCACGGTGAGTGGAGGGAGAAGGAAGGAGGACGGTCGGAAGGATTTT	63	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71951.1	1669	7e-23	1338 - 1394	100	57 / 57	minus	ABC26505
JLOC1	JLOC1_47849.1	1673	4e-23	35 - 91	100	57 / 57	plus
Harvest35	U35_23561	479	3e-25	64 - 123	100	60 / 60	plus

Contig Sequence (479 bp)

>U35_23561 479 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGTGCTCGCTTCCATTCATTTCGATCCCACAGACGCACCGC
ACGCACGCACGCACGGTCACGGTGAGTGGAGGGAGAAGGAAGGAGGACGGTCGGAAGGAT
TTTGGTGGCGGCTGCGAGGAGGCGATGGGGTGCGCGCGGACGGTGAAGGCCGGGGCGGCG
GCCGCGGCGGCGATGCTGGTGGCCGCCGGAGTGAGGCTGGTGGGGCCTGCGGCGGCGGGG
TTCGTGGCGGAGGAGATCCCTCGCGCGCAGGCGGCGGCGGCCACGTGGCTCACGCCGCCC
TACCTGTACCTCGTCATCAACGCCATCATCATCTCCATCGCCGCGTCCTCGCGGTTCCAG
ACCAGCCGTTCGTCGACCGCACACGCCGCTGTGGGGACGGAGCCGCTTCCGGTGCCCGCG
CCGGCTCTGGCGATGCCGATGGACATGCCTGTACCTGTAGTGGCCGTGGTGATGGCGGC

Homology of Contig U35_23561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None