- Probe CUST_16715_PI390587928
- Source Contig U35_23567
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_16715_PI390587928 | Hv_44K_v2 | AGAAGAAGAAGAAGAACCCCAAGCCCTCCGCCGGAGGGGTGCTAATCGTCGACGAGGACC | 210 | GeneList: brown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 13.499 | 14.039 | 1.438 | 0.397 | 0.451 | 0.570 |
Raw | 989.085 | 1431.526 | 129.132 | 45.707 | 22.206 | 31.352 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK357741 | 1930 | 2e-24 | 239 - 298 | 100 | 60 / 60 | plus | ABC23989 ABC43084 |
MLOC | MLOC_58319.2 | 2314 | 2e-24 | 1888 - 1947 | 100 | 60 / 60 | minus | ABC23989 ABC43084 |
MLOC | MLOC_58319.1 | 2333 | 2e-24 | 1825 - 1884 | 100 | 60 / 60 | minus | ABC23989 ABC43084 |
JLOC1 | JLOC1_37880.1 | 2274 | 8e-25 | 241 - 300 | 100 | 60 / 60 | plus | |
Harvest21 | ABC22876 | 331 | 3e-25 | 211 - 270 | 100 | 60 / 60 | plus | |
Harvest35 | U35_23567 | 332 | 3e-25 | 211 - 270 | 100 | 60 / 60 | plus |
Contig Sequence (332 bp)
>U35_23567 332 Hv_44K_v2 TCCACCCCGGCCGTCCTCGCCGCAGCCGAACAATAGCCGCCGGCGCCGCCCCCCGTCGAG CCGCGCCCTTGGGGCCCGCGGCGCCGCCACCCATGGCGACGAAGCAGCCGCCGCTGTCTT CTTCCACATCGGGGGCCGGGGTGTCCATGAAGGACTACCTCAGGCGGTACCAGTCGGGCC CCGCCGCCGCCGGCGATCAGAAGAAGGCCAAGAAGAAGAAGAAGAACCCCAAGCCCTCCG CCGGAGGGGTGCTAATCGTCGACGAGGACCCCGTGTGGCAGAAGCCGGTGCAGATCGAGG AGGACGAGCCGTCGTCAGGGGACGAGAAGCCT
Homology of Contig U35_23567 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |