barSeed - Barley Seed Development Database

Probe CUST_16709_PI390587928

Source Contig U35_35543

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16709_PI390587928	Hv_44K_v2	AAATGTATATATCGACCTGCTTAATTCTATGATGAATCTATCCATCCATTGACGAAAAAA	345	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65121.1	1029	3e-21	7 - 60	100	54 / 54	minus	ABC20371
MLOC	MLOC_65121.2	1837	3e-21	5 - 58	100	54 / 54	minus	ABC20371
JLOC1	JLOC1_42830.2	1839	2e-21	1769 - 1822	100	54 / 54	plus
JLOC1	JLOC1_42830.1	1202	2e-21	1132 - 1185	100	54 / 54	plus
Harvest35	U35_35543	416	3e-25	346 - 405	100	60 / 60	plus
Harvest35	U35_19371	1586	8e-21	1514 - 1575	95	59 / 62	plus

Contig Sequence (416 bp)

>U35_35543 416 Hv_44K_v2
GGGGATAAAGACGGCAGGTTGAAGGATGAGAAGGACGTGAGGCTCAAGGATGAGTTCCAT
AAGTTGTTGAACGGAAACCATGGGGATCCCACCGATCGGCGACAGCGGGTGCAGATGAAC
GGGAGGCACCCCGAGGAGGACATGCTCTCCGACGCCACGCCCAACGGCGCGTGACGGGGA
GTTGAGTTTTTCGTCTTGGCGCGCCCAAGGAGAATCCTGTGGGCGATGGCCTTTTTTCTC
TTTGTGTATCGGTGCTGAAACCGAACAAGACAGACGCCCACCATCCCTTCCTTATTGCGA
TGGCCTTCCTTTGAACAAAAGATATGTGGATGTGGATGTGGGTGTAAATGTATATATCGA
CCTGCTTAATTCTATGATGAATCTATCCATCCATTGACGAAAAAAAAAAAAAAAAA

Homology of Contig U35_35543 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None