- Probe CUST_16707_PI390587928
- Source Contig U35_35545
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16707_PI390587928 | Hv_44K_v2 | TTGTGTAGTTAACAGCTAAAGAGCAGTTGGATTTTGGTAATGCAAGGAGAATATAGGAAA | 14 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.646 | 0.821 | 0.940 | 1.223 | 1.100 | 1.818 |
| Raw | 197.981 | 377.852 | 389.105 | 755.002 | 248.313 | 453.121 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_35545 | 189 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (189 bp)
>U35_35545 189 Hv_44K_v2 TTTTTTTTTTTTTTTTTCCTATATTCTCCTTGCATTACCAAAATCCAACTGCTCTTTAGC TGTTAACTACACAAATCTCCAACTGCTCTTTAGCTGTTGACTACACAAATCTATTGACTA CCCCCTCGTCCCATAATGTAACAATTTCTTATCCTAACGTTGCTTCCAAAATCCTGCCAT CAACTCCCC
Homology of Contig U35_35545 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |