barSeed - Barley Seed Development Database

Probe CUST_16706_PI390587928

Source Contig U35_35546

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16706_PI390587928	Hv_44K_v2	CGTCCCGCGGATTTTGCTTGTACAATCTTGGTAATAATTTGCTAAACTGTTTTTTCTTTT	36	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.700	2.155	1.122	0.806	0.300	0.307
Raw	255.202	507.960	233.539	271.926	33.649	38.518

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375557	1149	2e-24	1071 - 1130	100	60 / 60	plus	None
MLOC	MLOC_37609.4	821	2e-24	585 - 644	100	60 / 60	plus	None
MLOC	MLOC_37609.2	1024	2e-24	943 - 1002	100	60 / 60	plus	None
MLOC	MLOC_37609.1	1139	2e-24	903 - 962	100	60 / 60	plus	None
JLOC1	JLOC1_24359.1	950	8e-25	683 - 742	100	60 / 60	plus
Harvest35	U35_35546	310	3e-25	37 - 96	100	60 / 60	minus

Contig Sequence (310 bp)

>U35_35546 310 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGACAGGCAAAGTTGTCTTAAAAGAAAAAACAGTTTAGCAAAT
TATTACCAAGATTGTACAAGCAAAATCCGCGGGACGAACCAACCACAGTTTTCTAAAGAT
GACATACCCAAACGACGAATCTCGTGGAAACAAATACGGATTTGCCAAACTAAACCAATC
AAGCTCCCAGTGACCGTCCAGTGCTCGAGGAGTGGGATGGTGATGGCGATGGCATCATGC
TGCTCCATTGTGTTTATCAGGTGACAAGGAAGTGTATGCCCGTGGTCGGGCCGCTTCGAT
TCTCCACCCC

Homology of Contig U35_35546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None