barSeed - Barley Seed Development Database

Probe CUST_16700_PI390587928

Source Contig U35_11592

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16700_PI390587928	Hv_44K_v2	GAAAATTAGTGCAGCAGGTCGGCCCTGAATAAATTCTGCTGCGTTCGTTCGTTGATGGAC	507	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.560	1.720	0.363	1.044	0.860	1.015
Raw	3227.867	1851.120	358.501	1601.325	464.266	597.775

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38530.1	1661	2e-24	10 - 69	100	60 / 60	minus	ABC35283
JLOC1	JLOC1_25059.1	1291	8e-25	31 - 90	100	60 / 60	minus
Harvest21	ABC35283	596	3e-25	508 - 567	100	60 / 60	plus	ABC35283
Harvest35	U35_11592	592	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_11592 592 Hv_44K_v2
GGCCTGCAGGCTTGCCCGACGATGTCAAGAAGTGGTTACAGGAGCACACGGACGCTGATG
GAGTCGCGGACAGCCAGTGCCTCGCAGTGCATGGCTGGGCGCCGCAGGTAGCCATCCTGT
CGCACCCGGCCGTGGGGGGCTTCATGACGCACTGCGGATGGGGCTCCACGCTGGAGAGCG
TCGCCGCAGGCGTGCCCATGGCCGCCTGGCCGTTCACCGCGGAGCAGTTCCTGAACGAGA
AGCTGATCGTGAACGTGCTCGGGATCGGTGTCTCCGTCGGCGTGAGCAAGCCGACGGAGG
GCGTGCTGACCGGTGGCAGCGGCGAGGCGAAGGCGGAGGTCGGGATGGAACAGGTGAAGA
TCGCCTTGGAGAAGCTCATGGATGGAGGAACCGAAGGGGGAGATAGGATTAGGAAGGTTC
AGGAGCTGAAGGCGAAGGCGAAGGCTGCTTTGGAGAATGGCGGGTCGTCATGTATGAATC
TGGACAAGCTGGTCCAGTCCGTCGTCTGAAAATTAGTGCAGCAGGTCGGCCCTGAATAAA
TTCTGCTGCGTTCGTTCGTTGATGGACAAAAAAAAAAAAAAAAAAANAAAAA

Homology of Contig U35_11592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44240.1	503	5e-75	protein\|cytokinin-O-glucosyltransferase 3, putative, expressed
Brachypodium v1_2	Bradi5g16100.1	496	6e-86
Arabidopsis v10	None