barSeed - Barley Seed Development Database

Probe CUST_1669_PI390587928

Source Contig U35_14046

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1669_PI390587928	Hv_44K_v2	GTCTTGTCGTCGCGGGATTTGTCTACGCTACTAGTTTGCCTTTCTCTTTGTCTGAAAAAA	771	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66505.2	1899	3e-22	1685 - 1740	100	56 / 56	plus	ABC05892 ABC05893
MLOC	MLOC_66505.1	1965	3e-22	1765 - 1820	100	56 / 56	plus	ABC05892 ABC05893
JLOC1	JLOC1_43831.1	2157	1e-22	1843 - 1898	100	56 / 56	plus
Harvest21	ABC05892	1911	5e-23	1698 - 1753	100	56 / 56	plus	ABC05892
Harvest35	U35_14046	842	3e-25	772 - 831	100	60 / 60	plus
Harvest35	U35_14052	1828	5e-23	1602 - 1657	100	56 / 56	plus

Contig Sequence (842 bp)

>U35_14046 842 Hv_44K_v2
CAAACCTCCAAGCGCTCCTCAACCTCCCCTCGCACCGGCGACATGGCCCGCACCAAGCAG
ACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCCGCC
CGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGCCCCACCGCTTCCGCCCCGGCACC
GTCGCGCTCCGCGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTC
CCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAG
TCCTCCGCCGTCTCCGCCCTGCAGGAGGCCGCCGAGTCCTACCTCGTCGGGCTGTTCGAG
GACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAG
CTCGCTCGCCGCATCCGTGGAGAGAGGGCCTAGGCTGCAGTCTGAGATCCATGTCCACCG
GTGCCCGTGTGGTCGCCGTGAAGAACGATCTCGCCAAGCTCCAGCTAACCGCGCCCGTCT
GCACAAGCAAAGGCGAGAAGGTCGCGCTGAGTCCCCGTGTCGAGAAGCATTGGCGCCTCA
TCGGATGGGGCCAGATCCAAGCCGGAGCGACCCTCGAAGTTCCACCCTGCCCGCTCTGAA
GAAAAAAAAAGGCGCACAGCTTGCGAAACAAGAGAGGCGAAATGTGGGAGGGCAGAGAGC
TCCTAGGTACAGTTTTTGTGAGGTGGAGGAGAAAACATTATGAGTCTGGAAGTCTTGTCG
TCGCGGGATTTGTCTACGCTACTAGTTTGCCTTTCTCTTTGTCTGAAAAAAAAAAAAAAA
AA

Homology of Contig U35_14046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	8e-81	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-81
Arabidopsis v10	AT5G65360.1	136	3e-81	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136