- Probe CUST_16699_PI390587928
- Source Contig U35_47520
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16699_PI390587928 | Hv_44K_v2 | TTTGGTGCCCTGGAGAAAGATCTCTGTCGAGCTCTATGTCAGCTAAGAACTGAATCTGAT | 650 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.873 | 1.210 | 1.704 | 1.430 | 0.672 | 0.588 |
| Raw | 35.021 | 69.962 | 91.648 | 117.639 | 20.328 | 19.125 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64873.1 | 5902 | 2e-24 | 5526 - 5585 | 100 | 60 / 60 | plus | ABC15138 |
| MLOC | MLOC_64873.4 | 4241 | 2e-24 | 3892 - 3951 | 100 | 60 / 60 | plus | ABC15138 |
| MLOC | MLOC_64873.3 | 5913 | 2e-24 | 5382 - 5441 | 100 | 60 / 60 | plus | ABC15138 |
| JLOC1 | JLOC1_42635.3 | 4128 | 8e-25 | 3465 - 3524 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42635.2 | 6070 | 8e-25 | 5407 - 5466 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42635.1 | 6083 | 8e-25 | 5420 - 5479 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48649 | 713 | 3e-25 | 651 - 710 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47520 | 713 | 3e-25 | 651 - 710 | 100 | 60 / 60 | plus |
Contig Sequence (713 bp)
>U35_47520 713 Hv_44K_v2 GCTCTATGCTTGACTATATGATTAAACTACCTAATGTTCTTGCTTGGGGTAATGTTCTTA CTGCCACTTGTTCAGCAATCGAGCACTTCTGCTCTCATGCACCTAGGATATCTTGGAGAC TGCAGACAGAGAAGTGGTTATCGTTATTGGTTTCAGCTGGAATTGAAGACCTCAAGAATA GTGAAACCTCGTTGATTAATCTTTTCTGTACAATGTTGAGTCACGCCGAACCAGAACAAC GCTCTGTTGCATTGCAGCAACTTGGGAGGATTATTCACTTGGCGAGCACTGCTGAAGTTG GATCTGGTTCAACAATGGCATCCCATTTGGTTACTCATACATGGAACAGAATAATAGCAT TGGCTCTCTATGACTCTTCTATGCTATTAAGGAATCATGCAATGGCTTTGCTTACTGAAT ATGTTCCATTTGTTGATAAAAATCATCTGCGGTCATTTCTTGCATCAAGTGACGGTATCC TGAAAGGTGTGGGGCAACTTTCGTGTGTAATCGAAGAGGGCTATTTGACACGAATGTCCT TACTGTTCCTTTCAAAGGCATGTCTTTATTCTTCTTCTGAAGATATTGCTTTGATTCCTG AATGTGTTTGGAGGAAATTGGAAAACATGCAAGCATCACTAACTGGAGGTTTTGGTGCCC TGGAGAAAGATCTCTGTCGAGCTCTATGTCAGCTAAGAACTGAATCTGATGCT
Homology of Contig U35_47520 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g43075.2 | 1537 | 7e-112 | protein|expressed protein |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |