barSeed - Barley Seed Development Database

Probe CUST_16695_PI390587928

Source Contig U35_11594

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16695_PI390587928	Hv_44K_v2	CATCGACAGAATGGTTAACCGGTAATTAAGCTGCTATACTGATGTATATTGTGAACATAA	489	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.018	5.298	1.274	0.643	0.369	0.435
Raw	127.306	182.838	38.135	29.659	5.832	6.976

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353730	2222	2e-24	2102 - 2161	100	60 / 60	plus	None
MLOC	MLOC_53813.1	1995	2e-24	925 - 984	100	60 / 60	plus	None
JLOC1	JLOC1_34596.1	1119	8e-25	921 - 980	100	60 / 60	plus
Harvest21	ABC51132	357	3e-25	240 - 299	100	60 / 60	plus
Harvest35	U35_11594	630	3e-25	490 - 549	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_11594 630 Hv_44K_v2
CTCGTTCGCACCGGACTACATAGCGGGGATGTCGCTGGTGTCGGTGTCGCTGGCCGGGTT
CTTCCTCTTCTCCGGCTACTTTCTGTCGCGGGAGAGCACGCCGGTGTACTGGGTGTTCAT
GCACTACGCTTCTCCCTACAAGTACGCTCTGGACGCCATGCTCGCCAACGAGTACTCGTG
CGCGGCGAACCGGTGCTTCGGGGTGGCCGGCGCTGGAGAGGAGTGCTCGGAGACGGGGCG
CGACGTGCTGGCGGCGCGGGGCCTCACGGCGGAGGAGCGGTGGACGGGGGTGCAGGTGCT
GTTTGGATTCTTCCTCCTCTACAGGGTGCTCTACTGGGTCGTGCTCAGCCGGAGAGCGTC
CACAGCCAAGAGGTGACCACTGATCGATCCATGAATTTCGTCTCCACCATTACTATACGA
GTGTGTGTGAACGCATGCATGGAGGCATGCATGTGACAGTTAAGGTATGCCAATGTCAAA
GTTCATCGACATCGACAGAATGGTTAACCGGTAATTAAGCTGCTATACTGATGTATATTG
TGAACATAAAATGACTTCTACATAAATGTATGAATGGATATGGATAATAAAACATTGATA
ATTCTCTACATGCCCAAAAAAAAAAAAAAA

Homology of Contig U35_11594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g30730.1	625	1e-66	protein\|ABC-2 type transporter domain containing protein, expressed
Brachypodium v1_2	Bradi1g40464.1	632	6e-70
Arabidopsis v10	None