- Probe CUST_16692_PI390587928
- Source Contig U35_47525
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16692_PI390587928 | Hv_44K_v2 | TATTGTTCCGTACGTGCAACTAGCTCGATCTCTTGTTGTGTTTTGCCCTTCGATTACTAT | 624 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.156 | 3.193 | 1.439 | 0.569 | 0.332 | 0.143 |
| Raw | 448.558 | 268.244 | 110.757 | 73.446 | 14.291 | 5.291 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_38823.1 | 1542 | 2e-24 | 7 - 66 | 100 | 60 / 60 | minus | ABC00015 |
| JLOC1 | JLOC1_25273.1 | 1903 | 8e-25 | 1483 - 1542 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00703 | 1503 | 3e-25 | 1365 - 1424 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00688 | 768 | 3e-25 | 85 - 144 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00015 | 869 | 3e-25 | 730 - 789 | 100 | 60 / 60 | plus | ABC00015 |
| Harvest21 | ABC00973 | 1168 | 6e-22 | 52 - 111 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_47525 | 684 | 3e-25 | 625 - 684 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_581 | 1559 | 3e-25 | 1418 - 1477 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_578 | 676 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_576 | 785 | 3e-25 | 646 - 705 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_582 | 571 | 6e-22 | 432 - 491 | 97 | 58 / 60 | plus |
Contig Sequence (684 bp)
>U35_47525 684 Hv_44K_v2 CTTGCTAGCTACCACAGCCACAGTGAGAGCTTGCAGCAGCGGCCATGGCGAGGAGCATTG CTCTGCTCTGCTTCGTCCTCGTCGGCGCCGTGTGCGCCACCATGAAGGAGCTCAAGTACT CCGTCGCCGCCAACTACAACATCCTCAACGAGATGATGGACAACTCGCTCGTAGCCGGGC TGAGGCACGTGAAGACGGCGTGCTGCGGCTCCGGGAAGCTCAACGCGGAGGTGATGTGCA GCCACCCGGGCACGACGGCGTGCCCCGCCGCCGACCACGATGACTACATGTTCTGGGACA TGCTCCACCCCACGCACGCCACCATCCAACGCGGCGTCGTCGCCTTCTTCTACGGCAACG GCCCCAAGTACGGCGAGCCCGTCAACTTCGCCACGCTCGTCACGGGCAAGAACGAATCTC CTGCGATCAAGATGGTCGTCGCCGACGAGTAAACCATGGATGGCATGCATGCATGCATGC ATGCGCACACGTGCATGTGGAATGGCCGTACGCCCTCTCGCCCTACGTATAAGATGTTTT AACAGTTTAATTTGAAACTGCCAAAACATCTTGTACTTTTAAAAACAGAGGCAGTACTAG ATAATAAGTGTGTTATTTTCACGTTATTGTTCCGTACGTGCAACTAGCTCGATCTCTTGT TGTGTTTTGCCCTTCGATTACTAT
Homology of Contig U35_47525 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |