barSeed - Barley Seed Development Database

Probe CUST_1666_PI390587928

Source Contig U35_14049

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1666_PI390587928	Hv_44K_v2	GCTCTATATGATCAATTGTTTGTCAGTGTGATCTTGCCCCAAATTTGAACAAAAAATTGG	670	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.436	1.257	1.046	1.003	0.420	0.297
Raw	3576.417	4927.987	3537.983	5415.023	779.055	602.188

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC31599	558	3e-25	40 - 99	100	60 / 60	minus	ABC31599
Harvest35	U35_14049	769	3e-25	671 - 730	100	60 / 60	plus

Contig Sequence (769 bp)

>U35_14049 769 Hv_44K_v2
CTCCATGCCCAGATCCCCCAAGAGCTCCCCCTCCTCCACCCACGACGCGAAGCCCTCCCT
CCCCGTCCCGATGGCGCGCACGAAGCAGACGGCGAGGAAGTCGACCGGCGGCAAGGCGCC
GAGGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAA
GAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAA
GAGCACCGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGAGGGAGATCGCGCA
GGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCGCTGCAGGAGGCCGC
CGAGTCCTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCG
CGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGCGAGAGGGCCTA
GGCTGCTTCGAACTTCTAGCTTCGTTGGAGGTGTAGCGAATGTTATCTTCTGAACCTGTG
TCGTTTGATGGAAATCTAGTTTGTGGTAGGAAGGTTCCTCGTTGTGTTCTGGTGCTGTGC
CTGATGTAACCATCTTGTTACCATCAGCAATGGAAAGTTGGCTATCGGAAAAAAAAAAAA
AAAAATGTGTGCTCTATATGATCAATTGTTTGTCAGTGTGATCTTGCCCCAAATTTGAAC
AAAAAATTGGATTACTGATATTTTGGATTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14049 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	3e-81	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	5e-82
Arabidopsis v10	AT5G65360.1	136	1e-81	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136