- Probe CUST_16661_PI390587928
- Source Contig U35_47538
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16661_PI390587928 | Hv_44K_v2 | TACGAGTGAACATTGGCTTCTGCTCATGGCCTATATTCTTATCTGATATTTGATGTCTTC | 236 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.265 | 1.741 | 1.116 | 0.799 | 0.197 | 0.194 |
| Raw | 548.521 | 694.851 | 385.810 | 444.627 | 37.719 | 40.210 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_21503.1 | 4296 | 2e-24 | 1430 - 1489 | 100 | 60 / 60 | plus | ABC25159 ABC48683 |
| MLOC | MLOC_21502.1 | 2422 | 2e-24 | 2346 - 2405 | 100 | 60 / 60 | plus | ABC48683 |
| JLOC1 | JLOC1_14917.1 | 1468 | 8e-25 | 1394 - 1453 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48683 | 319 | 3e-25 | 237 - 296 | 100 | 60 / 60 | plus | ABC48683 |
| Harvest35 | U35_47538 | 319 | 3e-25 | 237 - 296 | 100 | 60 / 60 | plus |
Contig Sequence (319 bp)
>U35_47538 319 Hv_44K_v2 TTTGGGTGTCGGCACGAGGCGTCATGGCGTTGGAGGGGCTCAAAATTTCTACAACTACGA CTAGTCCATTTGCAGCTACAACTGATATCTCAGTACTTCCAAGTACTGGTAGGCAGCTAC AACTGGTATCACTGTTAGTTAAGCAGAATCTCCTACCGTTCTATCCGCGTTTAGTATCTA ACCATCCGATGGTACTATGCCGTCAGGCCCACATGAACTTAGGCAAGGCAAATTAGTACG AGTGAACATTGGCTTCTGCTCATGGCCTATATTCTTATCTGATATTTGATGTCTTCTTTT TTAAAAAAAAAAAAAAAAA
Homology of Contig U35_47538 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |