barSeed - Barley Seed Development Database

Probe CUST_16659_PI390587928

Source Contig U35_23580

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16659_PI390587928	Hv_44K_v2	GACAAGTTGGTCTCTAGCTTGTAATTTCATACGTTTGATCTGATATAGGTTTAACTGCTT	562	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.376	1.765	1.200	0.835	0.283	0.348
Raw	3154.187	6266.177	3704.917	4225.247	482.902	651.305

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54602.1	2222	2e-24	2009 - 2068	100	60 / 60	plus	ABC19788
JLOC1	JLOC1_35153.1	2189	8e-25	1996 - 2055	100	60 / 60	plus
Harvest21	ABC19788	661	3e-25	40 - 99	100	60 / 60	minus	ABC19788
Harvest35	U35_23580	661	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_23580 661 Hv_44K_v2
GGGTTGGCTCGGTGAATATGAGGGGGATCAAAATCGCTATAATGCTGGTCGAGGAGCTCA
CATAAATCTCAAGCGTGCGGAGAAGGCAAGGGTATTGGTCAGCAAAATTCCATCCCTGCT
GGAGAATTTGACTGCTAAAGTTAGAGCTTGGGAAAAGGAGAAGGGCGCGCCATTTCTGTA
TAATAAGATGAGGCTTTTGGATAGCTTGGACAAATACACCTCTGAAAGGCAACAAAAGGA
AGAGGAAAAACGCCGATCACGGGAACTTAAGAAACTACAAGAGCAGTTTGCAGCAGAACA
AGGTGCAACCTATGGAGCGAAGCCTAGTCCTATGCGCCCGCTTTCGGCAAGGAAACCTCT
TGGGCAGAGTACTAATGTCAACATTGTTGGTGGAACTCCTAACAACCGGCGTGTGTCTAC
CCCAATTTCACGCAAGGGAGGCTTGTCTTGTGGAAAGATGAAGGACACTGGCAAGACAGC
TGCTTCTATACCGGCAAATTATGTTTCTCTTCCCAAGGATTGCTCCGACAATTCTTGCAT
GTGAAAATGTAATCACCCATCCGACAAGTTGGTCTCTAGCTTGTAATTTCATACGTTTGA
TCTGATATAGGTTTAACTGCTTGTTAATGCTTAATTGTTTATCTAACTTCTATGCAAAAC
C

Homology of Contig U35_23580 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33890.1	571	3e-76	protein\|microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi2g25500.1	577	3e-88
Arabidopsis v10	None