barSeed - Barley Seed Development Database

Probe CUST_16655_PI390587928

Source Contig U35_23584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16655_PI390587928	Hv_44K_v2	AACTCTTTTAAAGAGAGAGTTTGGATTCCATCCAGCACCAGCTTTAAGAATGAGAAATTT	777	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.308	0.267	0.466	1.674	3.140	2.890
Raw	9.082	10.804	18.911	95.239	69.402	69.856

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3793.3	1887	2e-24	1806 - 1865	100	60 / 60	plus	ABC11714 ABC20187 ABC49802 ABC49803
MLOC	MLOC_3793.2	2074	2e-24	1976 - 2035	100	60 / 60	plus	ABC11714 ABC20187 ABC49802 ABC49803
JLOC1	JLOC1_2284.2	2223	8e-25	2033 - 2092	100	60 / 60	plus
JLOC1	JLOC1_2284.1	2466	8e-25	2276 - 2335	100	60 / 60	plus
Harvest21	ABC20187	837	3e-25	778 - 837	100	60 / 60	plus	ABC20187
Harvest35	U35_23584	837	3e-25	778 - 837	100	60 / 60	plus

Contig Sequence (837 bp)

>U35_23584 837 Hv_44K_v2
GCTTATAGGTACTACCTATCGTATTTCTGGGCAAACGCGGAGGCGACCCGAAATGCTCTT
GGGATCAAGAAGGGGAGCGTGGATGAGTGGGTGAGGTGCCACAACGCCGATCTTCCCTAC
ACAATCGACCTCAGGAGCAGCATTGAGTACCACCGCAATGTCACGGCCAATGGCGGCTAC
CGTGCGCTTGTATACAGCGGCGACCATGACGCATTGGTGCCGCACCTGGGGACACAGGCG
TGGATCAGGTCACTTGGCTTCCCCGTCGCCCACCATTGGAGGGCATGGCATCTCCATGGC
CAGTCTGCTGGCTTCACCTTAACCTACTCCAACAACATGACATTCGCAACCATCAAGGGT
GGCGGGCACACCGCGCCAGAGTACGAGCCCGAGAGGTGCTTCGCCATGTTCAGCCGATGG
ATACTCGAAAAACCACTCTAGTAGACGTAACAGCAACGACCAGCTGCCTCACACCGAGGG
GCATCGCCGATGCCGATCTGGATTGAGGCGCCAGATCCGTCAGCTTGGCATGGGGCGGAG
AAGGCTGGATCTGGCCTTGGGGCCGGGAAGTAGGGCGGCCGACCCCTATCGGGGGGCTCG
CATCGCCATCCATTTGCAAGAGCTATCTCACACACTCGTGCACAATTCCCATATATAGTC
TTAGCTTTAAATGTGTTGTAACCTTGACTTGGCAATGGGCCTGTTTGGGACTACACTACA
TAAAATTCAGTTTCGTTTCGCCAAATTCATTTTGAAACAATTTCATATAAAAGTTGTAAC
TCTTTTAAAGAGAGAGTTTGGATTCCATCCAGCACCAGCTTTAAGAATGAGAAATTT

Homology of Contig U35_23584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g24510.1	480	4e-71	protein\|OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi2g41117.1	474	6e-93
Arabidopsis v10	None