- Probe CUST_16653_PI390587928
- Source Contig U35_23586
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16653_PI390587928 | Hv_44K_v2 | AATTGGGCAGGATCAACTCATGTCATCTGCGTGCCTGAGCTTATCTGTTTACAGTTTTTT | 368 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.578 | 2.664 | 1.341 | 0.536 | 0.042 | 0.014 |
| Raw | 687.744 | 1884.100 | 805.398 | 519.345 | 14.339 | 3.581 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC20120 | 484 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus | ABC20120 |
| Harvest35 | U35_23586 | 484 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus |
Contig Sequence (484 bp)
>U35_23586 484 Hv_44K_v2 CGCACTCTCATCGTACTTGACGAACTTGAACCACCTGCGCGCGCACGAATGGCGAACTAC TACATGAAGCAGGCCTTCCAATTCCTGGTGCTTTTCCTGGTTCTTCTCGGATGCTTTGCG TCTCGGGCTCAGAGTGAAGAAAAAGGGCATGGACCGGACATATTCTCATGCGAGAGGCAG TTGATGCGGCCATGCAACCTGTGTTACTGCTGCTTGTACGGCAACAATAAGGGAGCTTGC TACGCAACTGATGTGGACTGCAGGCTGAACTGCCCTCCGCCTAAATTCACCCTCCCATGA ACCTGAACATTTTATTGTCTCTCACTCATGTAGTACGTCTGTACTTCTAACCACATATTC TGGAAAATAATTGGGCAGGATCAACTCATGTCATCTGCGTGCCTGAGCTTATCTGTTTAC AGTTTTTTTTTCTTTGAGAAAAATAAATCCATTCCCAGTTTGATGAAGCACAAAAAAAAA AAAA
Homology of Contig U35_23586 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |