barSeed - Barley Seed Development Database

Probe CUST_16652_PI390587928

Source Contig U35_23588

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16652_PI390587928	Hv_44K_v2	TCGTCCCACGCGAGGGAGCGCGAGACGGTGGAGGAGGAGCCCGACGCGAAGCGCCACTGC	401	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.742	1.387	2.641	1.398	0.646	0.734
Raw	23.077	59.071	109.562	89.646	14.575	17.970

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_23588	491	3e-25	402 - 461	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_23588 491 Hv_44K_v2
CAAAGCAGAGCACAACTAGCCGTTGCCCAACCAACCCTCTGCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCTCCCCCGTCGCCGCGCCGCACACATCGCCCGTCCTCTGA
CCCCGATGGACTCCGCCGCGGCGTCCTCCCTCGTCGTCAGCCCCGCCTCCGACGACCGCT
TCTGGGACGGCCTGCGCAACCGCGTCGACACCATCCTCGAGGACCGCCGCCTCGTCGCCT
CCGCCGCGTCCACGTGCTCGGTGGCGTCCGGGCGCCCCAAGCGGCTCCGGGAGGACTCGC
TGATGCTGGTCCGCGGCCTCGACTCCGTCGCCGCGTCGCTCGCGCAGCTCTCCGACACCC
TCACCGCCGCCCAGAAGGGCGTGAACGCTCTGGCGACGTGCTCGTCCCACGCGAGGGAGC
GCGAGACGGTGGAGGAGGAGCCCGACGCGAAGCGCCACTGCGGCGGCGCCTCGACCCTGG
TCGCGACAAGC

Homology of Contig U35_23588 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None