barSeed - Barley Seed Development Database

Probe CUST_16651_PI390587928

Source Contig U35_23589

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16651_PI390587928	Hv_44K_v2	CACACTCATGACCATGGCATGAAAACTATGATAATATTTAACCTTGTGAAGCATGACAAC	907	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23716.1	843	3e-21	723 - 782	97	58 / 60	plus	ABC07972 ABC19912
JLOC1	JLOC1_16364.1	1012	2e-21	724 - 783	97	58 / 60	plus
Harvest21	ABC19912	971	3e-25	908 - 967	100	60 / 60	plus	ABC19912
Harvest35	U35_23589	971	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (971 bp)

>U35_23589 971 Hv_44K_v2
GCAGCAGCAGCCGCATCAGCAGCAGAACCATCAGCAGCAGCATCAGCAGCAGCACCATCA
GCAGCAGCATCAGCAGCAGCATCAGCAGCAGCATCAGCATCAGCAGCAGCATCATCAGCA
GCAGCAGCAGCCGCAGCAGCATCAGCAGCAGCAGCAGCATCAGCATCAACAGCAGCAGCA
GTCTCCTAGCACTCCCAATGCAAATGGTGGTCTCGCATCCGGAGCCGCGGTCGCCAACAC
CGCTGCTAGCGGAGAGCAGGCACAGCACATGAATAATGGCGCAGCAAAGGGCGCCACCCC
GATGGGCATGACGGGGCCTAGCAATCTGATCAACAGCGGAGCTGGCATGGTCCAGCGAAG
CAGCAGTTTCAAGTCGGTGAGCAGCAACCCGGCCGCTTCTGGTGGCAACGTGGAGACCCC
AAAGGCGGAGTCTGTGCACGACATGGATGAACTGGAACATCTCATCTCCCACGAACTCGT
GGGGAGCGGGCTGTTCATGGGGGAGCAGCCGGGGGACGGCGGCTTCTCGTGGAACATCTG
ACGTCATTGTGAACCAAAGTCTCGCTACTCCGAGAGCTGTGTTTGATGGTGATGTCGCAT
AGATTATTAGAAGTTCTTTTTTTCGAGCCGCCTGGAACAGTCTCTGGTGATCATAGATTG
ATGAACCTTGAGTTATGTGATGAGAGTGTGAGTTGGGTTTGGATGGCAGTGCAACCCAGT
GTTATTTAACTAGTATGGAATGACATGCTGTGGTTGTCATTTGTGCTGCTGCTATCGTGT
TACCAGTGTTTGGCTTGAATGCCCTGCCCTGATATATCCCTGAGATGAGAGAATGCCCTG
CCCTGATATATCCATGAGATGAGAGGTGTAGCAACCAGTATTGCATAACTACAGTAGCAC
TAGCAGGCACACTCATGACCATGGCATGAAAACTATGATAATATTTAACCTTGTGAAGCA
TGACAACTTTG

Homology of Contig U35_23589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None